View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11565_low_33 (Length: 242)
Name: NF11565_low_33
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_low_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 19742658 - 19742866
Alignment:
| Q |
20 |
aacatacagtgctagttgttgatcactaggaacaacaacttttattatacaaaatccccacttcaaattgaaacatcaactggaaactcatttatctcat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19742658 |
aacatacagtgctagttgttgatcactaggaaca---acttttattatacaaaatccccacttcaaattgaaacatcaacaggaaactcatttatctcat |
19742754 |
T |
|
| Q |
120 |
cactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacagcagtgttacacttaaatccagacccaaacgcaatttgccaaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19742755 |
cactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacagcagtgttacacttaaatccagacccaaatgcaatttgccaaat |
19742854 |
T |
|
| Q |
220 |
cctatcaccttt |
231 |
Q |
| |
|
|||||||||||| |
|
|
| T |
19742855 |
cctatcaccttt |
19742866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 19797430 - 19797222
Alignment:
| Q |
20 |
aacatacagtgctagttgttgatcactaggaacaacaacttttattatacaaaatccccacttcaaattgaaacatcaactggaaactcatttatctcat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19797430 |
aacatacagtgctagttgttgatcactaggaacaac---ttttattatacaaaatccccacttcaaattgaaacatcaacaggaaactcatttatctcat |
19797334 |
T |
|
| Q |
120 |
cactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacagcagtgttacacttaaatccagacccaaacgcaatttgccaaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19797333 |
cactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacagcagtgttacacttaaatccagacccaaatgcaatttgccaaat |
19797234 |
T |
|
| Q |
220 |
cctatcaccttt |
231 |
Q |
| |
|
|||||||||||| |
|
|
| T |
19797233 |
cctatcaccttt |
19797222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 19539610 - 19539823
Alignment:
| Q |
18 |
tgaacatacagtgctagttgttgatcactaggaacaacaacttttattatacaaaatccccacttcaaattgaaacatcaactggaaactcatttatctc |
117 |
Q |
| |
|
|||||||| | ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
19539610 |
tgaacataaaatgctagttgttgatcactaagaacaacaacttttattataaaaaatccccacttcaaattgaaacatcaacaggaaactcacttatctc |
19539709 |
T |
|
| Q |
118 |
atcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacagcagtgttacacttaaatccagacccaaacgcaatttgccaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
19539710 |
atcactccaaggattgatctctttaattggatcaacattctttaatgcacaccaaacagcagtgttacacttaaatctagacccaaatgcaatttgccaa |
19539809 |
T |
|
| Q |
218 |
atcctatcaccttt |
231 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
19539810 |
atcctatcaccttt |
19539823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 19671532 - 19671746
Alignment:
| Q |
18 |
tgaacatacagtgctagttgttgatcactaggaacaacaacttttattatacaaaa-tccccacttcaaattgaaacatcaactggaaactcatttatct |
116 |
Q |
| |
|
|||||||| | ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
19671532 |
tgaacataaaatgctagttgttgatcactaagaacaacaacttttattataaaaaaatccccacttcaaattgaaacatcaagaggaaactcacttatct |
19671631 |
T |
|
| Q |
117 |
catcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacagcagtgttacacttaaatccagacccaaacgcaatttgcca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19671632 |
catcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacaggagtgttacacttaaatccagacccaaatgcaatttgcca |
19671731 |
T |
|
| Q |
217 |
aatcctatcaccttt |
231 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
19671732 |
aatcctatcaccttt |
19671746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 87 - 231
Target Start/End: Original strand, 27776361 - 27776505
Alignment:
| Q |
87 |
ttgaaacatcaactggaaactcatttatctcatcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacagcagtgttaca |
186 |
Q |
| |
|
||||||||||||| ||||| |||| | |||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27776361 |
ttgaaacatcaacaggaaattcatgaagctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttaca |
27776460 |
T |
|
| Q |
187 |
cttaaatccagacccaaacgcaatttgccaaatcctatcaccttt |
231 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27776461 |
tttaaatccagacccaaatgcaatttgccaaatcctatcaccttt |
27776505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 10280137 - 10280063
Alignment:
| Q |
146 |
ggatcaacattccttaatgcacaccaaacagcagtgttacacttaaatccagacccaaacgcaatttgccaaatc |
220 |
Q |
| |
|
|||||||||||| | || ||| ||||||||||||| ||| |||||||||||| ||||| || |||||||||||| |
|
|
| T |
10280137 |
ggatcaacattcttcaaagcataccaaacagcagtattaaccttaaatccagatccaaaagccatttgccaaatc |
10280063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 34053481 - 34053342
Alignment:
| Q |
92 |
acatcaactggaaactcatttatctcatcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacagcagtgttacacttaa |
191 |
Q |
| |
|
|||| ||| |||||||||| |||||||| |||| ||||| |||| ||| ||||||||| |||| ||||||| ||| |||||| ||||||| |||| |
|
|
| T |
34053481 |
acatgaacaggaaactcatgaatctcatccatccatggatttttctccttagctggatcaacggtcctcaatgcacgccacacagcactgttacatttaa |
34053382 |
T |
|
| Q |
192 |
atccagacccaaacgcaatttgccaaatcctatcaccttt |
231 |
Q |
| |
|
||||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
34053381 |
atccagaaccaaatgcaatttgccaagtcctatcaccttt |
34053342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 15239705 - 15239643
Alignment:
| Q |
169 |
ccaaacagcagtgttacacttaaatccagacccaaacgcaatttgccaaatcctatcaccttt |
231 |
Q |
| |
|
|||||||||| | ||||||||||| ||||| ||||| |||||||||||| | ||||||||||| |
|
|
| T |
15239705 |
ccaaacagcactattacacttaaaaccagaaccaaatgcaatttgccaagttctatcaccttt |
15239643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 48672409 - 48672360
Alignment:
| Q |
169 |
ccaaacagcagtgttacacttaaatccagacccaaacgcaatttgccaaa |
218 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| ||||| |||| |||||||| |
|
|
| T |
48672409 |
ccaaacagcactgttacacttaaaaccagaaccaaaagcaagttgccaaa |
48672360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University