View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11565_low_34 (Length: 240)
Name: NF11565_low_34
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 26414230 - 26414407
Alignment:
| Q |
1 |
tttaggttttgagacatactataagcacattaattttcctattttcctattgaagttgtattagattatcacattcccaatgttttcgagttgtgcaatg |
100 |
Q |
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| T |
26414230 |
tttaggttttgagacatactgtaagcacattaattttcctattttcctattgaagttgtatta-----tcacattcccaatgttttcgagttgtgcaatg |
26414324 |
T |
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| Q |
101 |
ttttcctagttaatgagagtgagatctaagttaatttagcatgataccaaagtcggattttgtaggatatatggaatatggac |
183 |
Q |
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| T |
26414325 |
ttttcctagttaatgagagtgagatctaagttaatttagcatgataccaaagtcggattttgtaggatatatggaatatggac |
26414407 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 49189586 - 49189639
Alignment:
| Q |
48 |
tattgaagttgtattagattatcacattcccaatgttttcgagttgtgcaatgt |
101 |
Q |
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| T |
49189586 |
tattgaagttgtatttgagtatcacattgccaatgttcccgagttgtgcaatgt |
49189639 |
T |
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