View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11565_low_39 (Length: 237)
Name: NF11565_low_39
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4351965 - 4352186
Alignment:
| Q |
1 |
tacacacaggatgcttttgtttacattatctactatagtgacaattaattttttatatggacataataagttgttttccattttctttacacgtttaact |
100 |
Q |
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| T |
4351965 |
tacacacaggatgcttttgtttacattatcatctatagtgacaattaatttt-tatatggacataataagttgtttttcattttctttacacgtttaact |
4352063 |
T |
|
| Q |
101 |
gtattttacatggtcattctcttcacaaccttattagaaagaagctgagaatgaagaggagcccgaggaagtatccggggatgaatctggagaagagtct |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4352064 |
gtattttacatggtcattctcttcacaaccttaatagaaagaagctgagaatgaagaggagcccgaggaagtatccggggatgaatctggagaagagtct |
4352163 |
T |
|
| Q |
201 |
gatcaagaaactaaagttagtat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
4352164 |
gatcaagaaactaaagttagtat |
4352186 |
T |
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