View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11565_low_6 (Length: 574)
Name: NF11565_low_6
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 23 - 567
Target Start/End: Original strand, 49910551 - 49911106
Alignment:
| Q |
23 |
tgtatacggaatagtagaggagagacaaaagaaacgttggttgttaatgttttggagagaaaagcaaaaactgcgtgcgtaggttgggtgtgtagtacag |
122 |
Q |
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| T |
49910551 |
tgtatacggaatagtggaggagagacaaaagaaacgttggttgttaatgttttggagagaaaagcaaaaactgcgtgcgtaggttgggtgtgtagtacag |
49910650 |
T |
|
| Q |
123 |
aatacagttggtgtgggtgtcccagccttgctaattcactcttggctggcagtgagaatgagagtgagtgggttgaggagggagagggagggaattacaa |
222 |
Q |
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| T |
49910651 |
aatactgttagtgtgggtgtcccagccttgctaattcactcttggctggcagtgagaatgagagtgagtgggttgaggagggagagggagggaattacaa |
49910750 |
T |
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| Q |
223 |
aaagtgtgtttgtatttgaaaatgccagctaaattcaa--------ttcattcaacaacagagtagcnnnnnnnnnnnnn----gcagtgcttttatgct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||| |
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| T |
49910751 |
aaagtgtgtttgtatttgaaaatgccagctaaattcaattcattcattcattcaacaacag--tagcatatatatatatatatagcagtgcttttatgct |
49910848 |
T |
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| Q |
311 |
tgaaaagagcagctgagctgaggtgagctagctggctgcatgtttaattatctcctcatgatatatcaatccatgagtatagtcttgtacaagtagtatt |
410 |
Q |
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| T |
49910849 |
tgaaaagagcagctgagctgaggtgagctagctggttgcatgtttaattatctcctcatgatatatcaatccatgagtatagtcttgtacaagtagtatt |
49910948 |
T |
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| Q |
411 |
agtatatcnnnnnnngttgttttggaaatgggagaggaggatgagaataacattgcattcaactttgg-gattgggattgaagactttgttttgcttttg |
509 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49910949 |
agtatatctttttttgttgttttggaaatgggagaggaggatgagaataacattgcattcaactttggaaattgggattgaagactttgttttgcttttg |
49911048 |
T |
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| Q |
510 |
catttacaatgggactgggacatgctcttagctgagcttggatatcattcctttgctt |
567 |
Q |
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| T |
49911049 |
catttacaatgggactgggacatgctcttagctgagcttggatatcattcctttgctt |
49911106 |
T |
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