View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11565_low_7 (Length: 574)

Name: NF11565_low_7
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11565_low_7
NF11565_low_7
[»] chr4 (11 HSPs)
chr4 (1-360)||(19743127-19743486)
chr4 (1-360)||(19796602-19796961)
chr4 (1-360)||(19540084-19540442)
chr4 (1-360)||(19672007-19672366)
chr4 (490-556)||(52012880-52012946)
chr4 (490-556)||(9799366-9799432)
chr4 (432-495)||(19743558-19743621)
chr4 (432-495)||(19796467-19796530)
chr4 (490-548)||(46720218-46720276)
chr4 (490-531)||(47943261-47943302)
chr4 (493-533)||(53592952-53592992)
[»] chr6 (4 HSPs)
chr6 (1-360)||(27776766-27777125)
chr6 (490-556)||(34245669-34245735)
chr6 (502-555)||(11113665-11113718)
chr6 (524-556)||(17330519-17330551)
[»] chr5 (8 HSPs)
chr5 (490-556)||(38010617-38010683)
chr5 (490-556)||(29990064-29990130)
chr5 (490-552)||(13478052-13478114)
chr5 (490-545)||(13086855-13086910)
chr5 (498-556)||(10292981-10293039)
chr5 (490-556)||(13421013-13421079)
chr5 (490-556)||(13015483-13015549)
chr5 (518-556)||(42331073-42331111)
[»] chr3 (4 HSPs)
chr3 (490-556)||(42664775-42664841)
chr3 (490-556)||(47186277-47186343)
chr3 (490-556)||(31187073-31187139)
chr3 (490-556)||(34029294-34029360)
[»] chr1 (3 HSPs)
chr1 (490-556)||(8809643-8809709)
chr1 (490-552)||(35998354-35998416)
chr1 (498-555)||(35534512-35534569)
[»] chr2 (2 HSPs)
chr2 (490-556)||(3668013-3668079)
chr2 (490-547)||(10163584-10163641)


Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 19743127 - 19743486
Alignment:
Q  1 attgttctagtaaaggtagaacatattttccaagtgttgtgatgttggctttaagtgcaaaaccagctgaactcattaggtcttttgaaagtgatactcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  19743127 attgttctagtaaaggtagaacatattttccaagtgttgtgatgttggctttaagtgcaaaaccagccgaactcattagttcttttgaaagtgatactcc 19743226  T
Q  101 tgtgattttgtttgtttcatcttctttttgaaagactgaattgtaataagtatcttgtgaacctttgtgtgtacgaacagtgtgcttaaggtgatacttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19743227 tgtgattttgtttgtttcatcttctttttgaaagactgaattgtaacaagtatcttgtgaacctttgtgtgtacgaacagtgtgcttaagatgatacttt 19743326  T
Q  201 gaacgttgagaatttgaagaaatgtttgagagtaagattgctgcaccacctacacgaaagagacaatttgaaacaagcattgatctgttgtttcctaagt 300  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19743327 gaacgttgagaatctgaagaaatgtttgagagtaagattgctgcaccacctacacgaaagagacaatttgaaacaagcattgatctgttgtttcctaagt 19743426  T
Q  301 aatatccactgttgatgttttctgtgctcacaactaaggcatatgagtttgaatgtacct 360  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||    
T  19743427 aatatccactgttggtgttttctgtgctcacaactaaggcatatgagttttgatgtacct 19743486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 19796961 - 19796602
Alignment:
Q  1 attgttctagtaaaggtagaacatattttccaagtgttgtgatgttggctttaagtgcaaaaccagctgaactcattaggtcttttgaaagtgatactcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  19796961 attgttctagtaaaggtagaacatattttccaagtgttgtgatgttggctttaagtgcaaaaccagccgaactcattagttcttttgaaagtgatactcc 19796862  T
Q  101 tgtgattttgtttgtttcatcttctttttgaaagactgaattgtaataagtatcttgtgaacctttgtgtgtacgaacagtgtgcttaaggtgatacttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19796861 tgtgattttgtttgtttcatcttctttttgaaagactgaattgtaacaagtatcttgtgaacctttgtgtgtacgaacagtgtgcttaagatgatacttt 19796762  T
Q  201 gaacgttgagaatttgaagaaatgtttgagagtaagattgctgcaccacctacacgaaagagacaatttgaaacaagcattgatctgttgtttcctaagt 300  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19796761 gaacgttgagaatctgaagaaatgtttgagagtaagattgctgcaccacctacacgaaagagacaatttgaaacaagcattgatctgttgtttcctaagt 19796662  T
Q  301 aatatccactgttgatgttttctgtgctcacaactaaggcatatgagtttgaatgtacct 360  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||    
T  19796661 aatatccactgttggtgttttctgtgctcacaactaaggcatatgagttttgatgtacct 19796602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 19540084 - 19540442
Alignment:
Q  1 attgttctagtaaaggtagaacatattttccaagtgttgtgatgttggctttaagtgcaaaaccagctgaactcattaggtcttttgaaagtgatactcc 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||    
T  19540084 attgttctagtaaaggcagaacatattttccaagtgttgtgatgttggctttaagtgcaataccagccgaactcattagg-cttttgaaagtgatactcc 19540182  T
Q  101 tgtgattttgtttgtttcatcttctttttgaaagactgaattgtaataagtatcttgtgaacctttgtgtgtacgaacagtgtgcttaaggtgatacttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||| |||    
T  19540183 tgtgattttgtttgtttcatcttctttttgaaagactgaattgtaacaagtatcttgtgaacctttgtgtgtaggaacagtgtgtttaaggtgatatttt 19540282  T
Q  201 gaacgttgagaatttgaagaaatgtttgagagtaagattgctgcaccacctacacgaaagagacaatttgaaacaagcattgatctgttgtttcctaagt 300  Q
    ||||| |||||||  |  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19540283 gaacggtgagaatcagtggaaatgtttgagagtaagatggctgcaccacctacacgaaagagacaatttgaaacaagcattgatctgttgtttcctaagt 19540382  T
Q  301 aatatccactgttgatgttttctgtgctcacaactaaggcatatgagtttgaatgtacct 360  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  19540383 aatatccactgttgatgttttctatgctcacaattaaggcatatgagtttggatgtacct 19540442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 19672007 - 19672366
Alignment:
Q  1 attgttctagtaaaggtagaacatattttccaagtgttgtgatgttggctttaagtgcaaaaccagctgaactcattaggtcttttgaaagtgatactcc 100  Q
    |||||||| |||| |||| |||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19672007 attgttctggtaatggtaaaacaaattttccaagtgttgggatgttggctttaagggcaaaaccagctgaactcattaggtcttttgaaagtgatactcc 19672106  T
Q  101 tgtgattttgtttgtttcatcttctttttgaaagactgaattgtaataagtatcttgtgaacctttgtgtgtacgaacagtgtgcttaaggtgatacttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| |||    
T  19672107 tgtgattttgtttgtttcatcttctttttgaaagactgaattgtaacaagtatcttgcgaacctttgtgtgtacgaacagtgtgtttaaggtgatatttt 19672206  T
Q  201 gaacgttgagaatttgaagaaatgtttgagagtaagattgctgcaccacctacacgaaagagacaatttgaaacaagcattgatctgttgtttcctaagt 300  Q
    ||||| |||||||  |  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19672207 gaacggtgagaatcggtggaaatgtttgagagtaagatggctgcaccacctacacgaaagagacaatttgaaacaagcattgatctgttgtttcctaagt 19672306  T
Q  301 aatatccactgttgatgttttctgtgctcacaactaaggcatatgagtttgaatgtacct 360  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  19672307 aatatccactgttgatgttttctgtgctcacaattaaggcatatgagtttgcatgtacct 19672366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 490 - 556
Target Start/End: Original strand, 52012880 - 52012946
Alignment:
Q  490 tttaaaatgtgtgccacatggcacaccttaattagctaatgttatataacataatggtacacaagtg 556  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  52012880 tttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatggtacacaagtg 52012946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 490 - 556
Target Start/End: Complemental strand, 9799432 - 9799366
Alignment:
Q  490 tttaaaatgtgtgccacatggcacaccttaattagctaatgttatataacataatggtacacaagtg 556  Q
    |||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9799432 tttaaagtgtgtgtcacatgtcacaccttaattagctaatgttatataacataatggtacacaagtg 9799366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 432 - 495
Target Start/End: Original strand, 19743558 - 19743621
Alignment:
Q  432 atgagagagaaagttatgtcaagattttttacattttccagtttctacaaatcataactttaaa 495  Q
    |||||||||||| |||| |||||||||||||||||||  |||||||||||||||||||| ||||    
T  19743558 atgagagagaaaattatatcaagattttttacattttttagtttctacaaatcataactataaa 19743621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 432 - 495
Target Start/End: Complemental strand, 19796530 - 19796467
Alignment:
Q  432 atgagagagaaagttatgtcaagattttttacattttccagtttctacaaatcataactttaaa 495  Q
    |||||||||||| |||| |||||||||||||||||||  |||||||||||||||||||| ||||    
T  19796530 atgagagagaaaattatatcaagattttttacattttttagtttctacaaatcataactataaa 19796467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 490 - 548
Target Start/End: Original strand, 46720218 - 46720276
Alignment:
Q  490 tttaaaatgtgtgccacatggcacaccttaattagctaatgttatataacataatggta 548  Q
    |||||| ||||||||||||| ||||||||||||  ||||||||||||||||||||||||    
T  46720218 tttaaagtgtgtgccacatgacacaccttaattgactaatgttatataacataatggta 46720276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 490 - 531
Target Start/End: Original strand, 47943261 - 47943302
Alignment:
Q  490 tttaaaatgtgtgccacatggcacaccttaattagctaatgt 531  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  47943261 tttaaaatgtgtgccacatgtcacaccttaattagctaatgt 47943302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 533
Target Start/End: Complemental strand, 53592992 - 53592952
Alignment:
Q  493 aaaatgtgtgccacatggcacaccttaattagctaatgtta 533  Q
    |||| ||||||||||||||||||| |||||||| |||||||    
T  53592992 aaaaggtgtgccacatggcacaccctaattagccaatgtta 53592952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 27776766 - 27777125
Alignment:
Q  1 attgttctagtaaaggtagaacatattttccaagtgttgtgatgttggctttaagtgcaaaaccagctgaactcattaggtcttttgaaagtgatactcc 100  Q
    |||||||||||||||||| |||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| ||||| | |||    
T  27776766 attgttctagtaaaggtaaaactgattttccaagtgttgtgatgtttgctttaagtgcaaaaccagctgaactcattagttgttttgagagtgaaattcc 27776865  T
Q  101 tgtgattttgtttgtttcatcttctttttgaaagactgaattgtaataagtatcttgtgaacctttgtgtgtacgaacagtgtgcttaaggtgatacttt 200  Q
    |||||||||||||||||||||||||| ||||| || |||||||||| || |||||||||||||||||||||||||||||||||| |||||| |||| |||    
T  27776866 tgtgattttgtttgtttcatcttcttgttgaaggattgaattgtaacaattatcttgtgaacctttgtgtgtacgaacagtgtgtttaaggagatatttt 27776965  T
Q  201 gaacgttgagaatttgaagaaatgtttgagagtaagattgctgcaccacctacacgaaagagacaatttgaaacaagcattgatctgttgtttcctaagt 300  Q
    ||||| | ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27776966 gaacggttagaatctgaagaaatgtttgagagtaaaattgctgcaccacctacacgaaagagacaatttgaaacaagcattgatctgctgtttcctaagt 27777065  T
Q  301 aatatccactgttgatgttttctgtgctcacaactaaggcatatgagtttgaatgtacct 360  Q
    |  ||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||||    
T  27777066 accatccactattgatgttttctgtgctcactactaatgcatatgagtttggatgtacct 27777125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 490 - 556
Target Start/End: Original strand, 34245669 - 34245735
Alignment:
Q  490 tttaaaatgtgtgccacatggcacaccttaattagctaatgttatataacataatggtacacaagtg 556  Q
    |||||| ||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||    
T  34245669 tttaaagtgtgtgccacatgacacaccttaattggctaatgttatataatataatggtacacaagtg 34245735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 555
Target Start/End: Original strand, 11113665 - 11113718
Alignment:
Q  502 gccacatggcacaccttaattagctaatgttatataacataatggtacacaagt 555  Q
    |||||||||||||||||||||  | ||||||||||| ||| |||||||| ||||    
T  11113665 gccacatggcacaccttaattgaccaatgttatataccattatggtacataagt 11113718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Complemental strand, 17330551 - 17330519
Alignment:
Q  524 gctaatgttatataacataatggtacacaagtg 556  Q
    |||||| ||||||||||||||||||||||||||    
T  17330551 gctaatattatataacataatggtacacaagtg 17330519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 490 - 556
Target Start/End: Complemental strand, 38010683 - 38010617
Alignment:
Q  490 tttaaaatgtgtgccacatggcacaccttaattagctaatgttatataacataatggtacacaagtg 556  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38010683 tttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 38010617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 490 - 556
Target Start/End: Original strand, 29990064 - 29990130
Alignment:
Q  490 tttaaaatgtgtgccacatggcacaccttaattagctaatgttatataacataatggtacacaagtg 556  Q
    |||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  29990064 tttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtacacaagtg 29990130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 490 - 552
Target Start/End: Complemental strand, 13478114 - 13478052
Alignment:
Q  490 tttaaaatgtgtgccacatggcacaccttaattagctaatgttatataacataatggtacaca 552  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  13478114 tttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatcgtacaca 13478052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 490 - 545
Target Start/End: Original strand, 13086855 - 13086910
Alignment:
Q  490 tttaaaatgtgtgccacatggcacaccttaattagctaatgttatataacataatg 545  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13086855 tttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatg 13086910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 498 - 556
Target Start/End: Original strand, 10292981 - 10293039
Alignment:
Q  498 gtgtgccacatggcacaccttaattagctaatgttatataacataatggtacacaagtg 556  Q
    ||||||||| ||||||||||||||| || ||||||||||||||| ||||||||||||||    
T  10292981 gtgtgccacgtggcacaccttaattggccaatgttatataacattatggtacacaagtg 10293039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 490 - 556
Target Start/End: Complemental strand, 13421079 - 13421013
Alignment:
Q  490 tttaaaatgtgtgccacatggcacaccttaattagctaatgttatataacataatggtacacaagtg 556  Q
    |||||| ||| ||||||||| ||||||||| ||  ||||||||||||||||||||||||||||||||    
T  13421079 tttaaagtgtatgccacatgacacaccttacttgactaatgttatataacataatggtacacaagtg 13421013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 490 - 556
Target Start/End: Original strand, 13015483 - 13015549
Alignment:
Q  490 tttaaaatgtgtgccacatggcacaccttaattagctaatgttatataacataatggtacacaagtg 556  Q
    |||||| | ||||||||||| |||| ||||||| |||||||||||||||||||||| ||| ||||||    
T  13015483 tttaaagtatgtgccacatgtcacatcttaattggctaatgttatataacataatgatacgcaagtg 13015549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 518 - 556
Target Start/End: Complemental strand, 42331111 - 42331073
Alignment:
Q  518 taattagctaatgttatataacataatggtacacaagtg 556  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  42331111 taattggctaatgttatataacataatggtacacaagtg 42331073  T

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Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 490 - 556
Target Start/End: Original strand, 42664775 - 42664841
Alignment:
Q  490 tttaaaatgtgtgccacatggcacaccttaattagctaatgttatataacataatggtacacaagtg 556  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42664775 tttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatggtacacaagtg 42664841  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 490 - 556
Target Start/End: Original strand, 47186277 - 47186343
Alignment:
Q  490 tttaaaatgtgtgccacatggcacaccttaattagctaatgttatataacataatggtacacaagtg 556  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  47186277 tttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 47186343  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 490 - 556
Target Start/End: Complemental strand, 31187139 - 31187073
Alignment:
Q  490 tttaaaatgtgtgccacatggcacaccttaattagctaatgttatataacataatggtacacaagtg 556  Q
    |||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  31187139 tttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtacacaagtg 31187073  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 490 - 556
Target Start/End: Complemental strand, 34029360 - 34029294
Alignment:
Q  490 tttaaaatgtgtgccacatggcacaccttaattagctaatgttatataacataatggtacacaagtg 556  Q
    |||||| |||||| |||||  |||||||||||| |||||||||||||||||||||||||||||||||    
T  34029360 tttaaagtgtgtgtcacatatcacaccttaattggctaatgttatataacataatggtacacaagtg 34029294  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 490 - 556
Target Start/End: Complemental strand, 8809709 - 8809643
Alignment:
Q  490 tttaaaatgtgtgccacatggcacaccttaattagctaatgttatataacataatggtacacaagtg 556  Q
    |||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  8809709 tttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtacacaagtg 8809643  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 490 - 552
Target Start/End: Original strand, 35998354 - 35998416
Alignment:
Q  490 tttaaaatgtgtgccacatggcacaccttaattagctaatgttatataacataatggtacaca 552  Q
    |||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  35998354 tttaaagtgtgtgccacatggcacatcttaattggctaatgttatataacataatggtacaca 35998416  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 498 - 555
Target Start/End: Original strand, 35534512 - 35534569
Alignment:
Q  498 gtgtgccacatggcacaccttaattagctaatgttatataacataatggtacacaagt 555  Q
    |||||||||||| |||||||||||| || ||| ||||||||||| ||||| |||||||    
T  35534512 gtgtgccacatgacacaccttaattggccaatattatataacattatggttcacaagt 35534569  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 490 - 556
Target Start/End: Complemental strand, 3668079 - 3668013
Alignment:
Q  490 tttaaaatgtgtgccacatggcacaccttaattagctaatgttatataacataatggtacacaagtg 556  Q
    |||||| || ||||||||||||||| ||||||| |||||| |||||||| |||||||||||||||||    
T  3668079 tttaaagtgagtgccacatggcacatcttaattggctaatattatataatataatggtacacaagtg 3668013  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 490 - 547
Target Start/End: Original strand, 10163584 - 10163641
Alignment:
Q  490 tttaaaatgtgtgccacatggcacaccttaattagctaatgttatataacataatggt 547  Q
    |||||| | ||||| |||||||| |||||||||  |||||||||||||||||||||||    
T  10163584 tttaaagtatgtgctacatggcataccttaattgactaatgttatataacataatggt 10163641  T

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