View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11565_low_8 (Length: 567)
Name: NF11565_low_8
Description: NF11565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11565_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 209 - 550
Target Start/End: Original strand, 13880988 - 13881329
Alignment:
| Q |
209 |
tttgaggataagatgaaaattataatgttatatttccatcagatttgaagactgactgagaagctcaaatggtggcctctgcatcacctccttcactgtt |
308 |
Q |
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| T |
13880988 |
tttgaggataagatgaaaattataatgttatatttccatcagatttgaagactgactgagaagctcaaatggtggcctctgcatcacctccttcactgtt |
13881087 |
T |
|
| Q |
309 |
aaggggcatgagtctgttatccagaagtatgtgaatgtagtttctggattccctgtgcatggaaagtaagaagatgttgaatgtaagaagggaaaatgta |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
13881088 |
aaggggcatgagtctgttatccagaagtatgtgaatgtagtttctggattccctgtgcatggaaagtaagaaaatgttgaatgtaagaagggaaaacgta |
13881187 |
T |
|
| Q |
409 |
aaacgtaagctatccgattaatattgattaaagtctaaagtgattaaacgcaatactatcataaatttagtaacacaagctgattttatgataggatgag |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13881188 |
aaacgtaagctatccgattaatattgattaaagtctaaagtgattaaacgcaatactatcataaatttagtaacacaagctggttttatgataggatgag |
13881287 |
T |
|
| Q |
509 |
accatctgcttccaatatcttaactttctgcaatccaatgat |
550 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881288 |
accatctgcttccaatatcttaactttctgcaatccaatgat |
13881329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 13880629 - 13880836
Alignment:
| Q |
1 |
gtataccaatcaactccatttcatactgatcagcatggttaatttgtatatagaaaactacgtggaataaaaagcatagaattcgatcttacaaaagata |
100 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13880629 |
gtataccaatcaactccatttcatactga---ggatggttaatttgtatatagaaaactacgtggaataaaaagcatagaattcgatcttacaaaagatg |
13880725 |
T |
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| Q |
101 |
tagtaatatggtaaatgtcgcataggaaacaaaagatgtagttactgcagctaccaatttcataaacattgaattgattttttcacaaatcctccaccat |
200 |
Q |
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| T |
13880726 |
tagtaatatggtaaatgtcgcataggaaacaaaagatgtagttactgcagctaccaatttcataaacattgaattga-tttttcacaaatcctccaccat |
13880824 |
T |
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| Q |
201 |
tgatctactttg |
212 |
Q |
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|||||||||||| |
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| T |
13880825 |
tgatctactttg |
13880836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 209 - 550
Target Start/End: Original strand, 13254381 - 13254735
Alignment:
| Q |
209 |
tttgaggataagatgaaaattataatgttatatttccatcagatttgaagactgactgagaagctcaaatggtggcctctgcatcacctccttcactgtt |
308 |
Q |
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|||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||| |||| |
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| T |
13254381 |
tttgaggataagatgaaaattataatgtaacattttcatcagatttgaagactgactgagaacctcaaatggtggcctatgtatcacctccttcattgtt |
13254480 |
T |
|
| Q |
309 |
aaggggcatgagtctgttatccagaagtatgtgaatgtagtttctggattccctgtgcatggaaagtaagaagatgttgaatgtaagaagggaaaatgta |
408 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||| ||| || ||||||||||||||||| | ||| |
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| T |
13254481 |
aaggggcatgagtctgttatccagaagtatgtgaatgcagtttctggattctccgtgcatggaaagtcggaaaatattgaatgtaagaagggagagcgta |
13254580 |
T |
|
| Q |
409 |
aaacgtaagctatccgattaatattgattaaagtctaaagtgattaaacgcaatactatc-at------------aaatttagtaacacaagctgatttt |
495 |
Q |
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|||||||||||||||||||||||| ||||| ||| |||||||||||| ||||| ||||| || | ||| |||||||||||| |||| |
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| T |
13254581 |
aaacgtaagctatccgattaatatcgattagagttaaaagtgattaaaagcaatgctatctatattttgcaggtaagattcagtaacacaagcatgtttt |
13254680 |
T |
|
| Q |
496 |
atgataggatgagaccatctgcttccaatatcttaactttctgcaatccaatgat |
550 |
Q |
| |
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|| || ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13254681 |
atcgtaaaatgagaccatctgcttccaatatctgaactttctgcaatccaatgat |
13254735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 264 - 429
Target Start/End: Complemental strand, 14367395 - 14367230
Alignment:
| Q |
264 |
ctgagaagctcaaatggtggcctctgcatcacctccttcactgttaaggggcatgagtctgttatccagaagtatgtgaatgtagtttctggattccctg |
363 |
Q |
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||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||| |
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| T |
14367395 |
ctgagaacctcaaatggtggcttatgcatcacctccttcactgttaaggggcatgagtctgttatccagaagtatgagaacgcagtctctggattccctg |
14367296 |
T |
|
| Q |
364 |
tgcatggaaagtaagaagatgttgaatgtaagaagggaaaatgtaaaacgtaagctatccgattaa |
429 |
Q |
| |
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|||||||||||| |||| | ||||||||||||||||| | ||||| ||||||||||||||||| |
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| T |
14367295 |
tgcatggaaagtcagaaattattgaatgtaagaagggatagcgtaaactgtaagctatccgattaa |
14367230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 13253954 - 13254045
Alignment:
| Q |
44 |
ttgtatatagaaaactacgtggaataaaaagcatagaattcgatcttacaaaagatatagtaatatggtaaatgtcgcataggaaacaaaag |
135 |
Q |
| |
|
||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13253954 |
ttgtatataaaaaactaagtggagtaaaaagcatagaatttgatcttacaaaagatgtagtaatatggtaaatgtcgcataggaaacaaaag |
13254045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 13254239 - 13254277
Alignment:
| Q |
144 |
actgcagctaccaatttcataaacattgaattgattttt |
182 |
Q |
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| T |
13254239 |
actgcagctaccaatttcataaacattgaattgattttt |
13254277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 13878079 - 13878144
Alignment:
| Q |
146 |
tgcagctaccaatttcataaacattgaattgattttttcacaaatcctccaccattgatctactttg |
212 |
Q |
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| T |
13878079 |
tgcagccaccaatttcatcaccattgaattgatttcc-cacatatcctccaccattgatctactttg |
13878144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 477 - 534
Target Start/End: Complemental strand, 14367184 - 14367127
Alignment:
| Q |
477 |
agtaacacaagctgattttatgataggatgagaccatctgcttccaatatcttaactt |
534 |
Q |
| |
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|||||||||||||| |||||| ||| ||||||||||||||| ||||||||| ||||| |
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| T |
14367184 |
agtaacacaagctggttttatattagaatgagaccatctgctcccaatatctgaactt |
14367127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 456
Target Start/End: Original strand, 13139649 - 13139698
Alignment:
| Q |
407 |
taaaacgtaagctatccgattaatattgattaaagtctaaagtgattaaa |
456 |
Q |
| |
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|||| |||||| |||| ||||||||||||||||||| |||||||||||| |
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| T |
13139649 |
taaaccgtaagttatctgattaatattgattaaagtgaaaagtgattaaa |
13139698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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