View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11566_high_13 (Length: 307)
Name: NF11566_high_13
Description: NF11566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11566_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 42682006 - 42682182
Alignment:
| Q |
8 |
tgacatgatccaaatccaaacaaaatcacaacctcgtaaaaacaagaaacaggaacnnnnnnnnctagttagtttttccttaacatgggttcagatcctt |
107 |
Q |
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| T |
42682006 |
tgacatgatccaaatccaaacaaaatcacaacctcgtaaaaacaagaaacagcaacaaaagaaactagttagtttttccttaacatgggttcagatcctt |
42682105 |
T |
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| Q |
108 |
tgtcactgaattcaacaaaaccaacacaaattccaactcaagatcaacaagaacatgattcaccatcatcatcatca |
184 |
Q |
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| T |
42682106 |
tgtcactgaattcaacaaaaccaacacaaattccaactcaagatcaacaagaacatgattcaccatcatcatcatca |
42682182 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 43367254 - 43367217
Alignment:
| Q |
267 |
cattatggaaattctatctacaactcatattcatctca |
304 |
Q |
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| T |
43367254 |
cattatggaaattctaactacaacacatattcatctca |
43367217 |
T |
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