View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11566_high_16 (Length: 243)
Name: NF11566_high_16
Description: NF11566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11566_high_16 |
 | |
|
| [»] chr7 (19 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr2 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-128; HSPs: 19)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 8576101 - 8576343
Alignment:
| Q |
1 |
ccaacaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8576101 |
ccaacaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattca |
8576200 |
T |
|
| Q |
101 |
tttcctcaaacttggcccgggttattgaggaacagaagtcaatacctttatatatagcatctagttcaattgtggcctcagtgtcgtatgaaagtgtcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
8576201 |
tttcctcaaacttggcccgggttattgaggaacagaagtcaatacctttatatatagcatctagttcaattgtggcatcagtgtcatatgaaagtgtcct |
8576300 |
T |
|
| Q |
201 |
ttttgccttttcacaagcagttctcagcctccttaaggctttt |
243 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8576301 |
ttttgccttttcacaagcagttctcaacctccttaaggctttt |
8576343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 8570086 - 8570328
Alignment:
| Q |
1 |
ccaacaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
8570086 |
ccaacaaggacaacatcatctacactattcttttccatcttagcatcagcaagacaactattaacagtttccatacacttttcaaagaggttcatattca |
8570185 |
T |
|
| Q |
101 |
tttcctcaaacttggcccgggttattgaggaacagaagtcaatacctttatatatagcatctagttcaattgtggcctcagtgtcgtatgaaagtgtcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||| || ||||||||||||||||| ||||||||||||||||| || |||||||||||||| |
|
|
| T |
8570186 |
tttcctcaaacttggcccgggttattgatgaactgaagtcaattcccttatatatagcatctagctcaattgtggcctcagtatcatatgaaagtgtcct |
8570285 |
T |
|
| Q |
201 |
ttttgccttttcacaagcagttctcagcctccttaaggctttt |
243 |
Q |
| |
|
||||||| | |||||||| ||||| | |||||| ||||||||| |
|
|
| T |
8570286 |
ttttgccctctcacaagctgttcttaacctcctcaaggctttt |
8570328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 8545408 - 8545648
Alignment:
| Q |
1 |
ccaacaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| | |||||||||||||||||||| |||||||| |
|
|
| T |
8545408 |
ccaacaaggacaacatcatctacactacccttgtccatcttagcatcaacaagacaacaattaacagtgtccatacacttttcaaagaggtccatattca |
8545507 |
T |
|
| Q |
101 |
tttcctcaaacttggcccgggttattgaggaacagaagtcaatacctttatatatagcatctagttcaattgtggcctcagtgtcgtatgaaagtgtcct |
200 |
Q |
| |
|
|| ||||||||||||||| || || | ||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8545508 |
attgctcaaacttggcccgagtgatgcatgaacaaaagtcaataccttgatataaagcatctaggtcaattgtggcctcagtgtcgtatgaaagtgtcct |
8545607 |
T |
|
| Q |
201 |
ttttgccttttcacaagcagttctcagcctccttaaggctt |
241 |
Q |
| |
|
||||||||| ||||| |||||||||| |||||| ||||||| |
|
|
| T |
8545608 |
ttttgccttctcacaggcagttctcaacctcctcaaggctt |
8545648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 8581475 - 8581717
Alignment:
| Q |
1 |
ccaacaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
8581475 |
ccaacaaggacaacatcatctacactacccctgtccatcttagcatcggcaagacaactattaacagtgtccatacacttttcaaagaggttcatattca |
8581574 |
T |
|
| Q |
101 |
tttcctcaaacttggcccgggttattgaggaacagaagtcaatacctttatatatagcatctagttcaattgtggcctcagtgtcgtatgaaagtgtcct |
200 |
Q |
| |
|
||| ||||||||||||||| |||||||| ||| ||||||||||||||| || ||||| |||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
8581575 |
tttgctcaaacttggcccgagttattgacgaatagaagtcaataccttgatgtatagaatctaggtcaattgtggcctcagtgtcatatgaaagtgtcct |
8581674 |
T |
|
| Q |
201 |
ttttgccttttcacaagcagttctcagcctccttaaggctttt |
243 |
Q |
| |
|
||| || | ||||||||||| |||| ||| || | ||||||| |
|
|
| T |
8581675 |
tttcgctctctcacaagcagtcctcaaccttctaatggctttt |
8581717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 8537811 - 8538036
Alignment:
| Q |
1 |
ccaacaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattca |
100 |
Q |
| |
|
||||| || ||||||||||| | |||| | ||||||||||||||||| || |||| | |||||||| |||||||||||||||||||||| ||| || | |
|
|
| T |
8537811 |
ccaactagtacaacatcatccatactactactgtccatcttagcatcattaaaacaactcttaacagttttcatacacttttcaaagaggtccatgttga |
8537910 |
T |
|
| Q |
101 |
tttcctcaaacttggcccgggttattgaggaacagaagtcaatacctttatatatagcatctagttcaattgtggcctcagtgtcgtatgaaagtgtcct |
200 |
Q |
| |
|
|| ||||||||||||||| || ||||| |||||||| |||| ||| | | |||||||||||| ||||||||||| ||||||||||| ||||| | ||| |
|
|
| T |
8537911 |
gttgctcaaacttggcccgagtgattgatgaacagaaatcaacaccctgacatatagcatctatatcaattgtggcttcagtgtcgtaagaaagcgacct |
8538010 |
T |
|
| Q |
201 |
ttttgccttttcacaagcagttctca |
226 |
Q |
| |
|
||||||| | || || |||||||||| |
|
|
| T |
8538011 |
ttttgccctctcgcatgcagttctca |
8538036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 8559103 - 8559319
Alignment:
| Q |
1 |
ccaacaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattca |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||| | || || | | |||||||||||||||||| | |||||||| |
|
|
| T |
8559103 |
ccaacaaggaatacatcatcgacactattcttgtccatcttagcatctgcaaggcaactcttggcaatctccatacacttttcaaagagatccatattca |
8559202 |
T |
|
| Q |
101 |
tttcctcaaacttggcccgggttattgaggaacagaagtcaatacctttatatatagcatctagttcaattgtggcctcagtgtcgtatgaaagtgtcct |
200 |
Q |
| |
|
|| ||||||||| ||||| || ||||| ||||| |||||||| || | | |||||||||||| ||||||||||||| |||| ||| |||||| || |
|
|
| T |
8559203 |
gttgctcaaacttagcccgtgtgattgatgaacacaagtcaatgccctgacatatagcatctatgtcaattgtggccttagtgatgtaagaaagttctct |
8559302 |
T |
|
| Q |
201 |
ttttgccttttcacaag |
217 |
Q |
| |
|
||||||| |||| |||| |
|
|
| T |
8559303 |
ttttgccctttcgcaag |
8559319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 8609692 - 8609924
Alignment:
| Q |
1 |
ccaacaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattca |
100 |
Q |
| |
|
|||||||| |||||||||||||| | ||||| ||||| | |||||||| |||||| | | ||| || | |||||||||||||||||||| ||| || | |
|
|
| T |
8609692 |
ccaacaagaacaacatcatctacggttttcttatccatttcagcatcagtaagacatctttcaaccgtctccatacacttttcaaagaggtccatgttaa |
8609791 |
T |
|
| Q |
101 |
tttcctcaaacttggcccgggttattgaggaacagaagtcaatacctttatatatagcatctagttcaattgtggcctcagtgtcgtatgaaagtgtcct |
200 |
Q |
| |
|
|| ||||||||| || || || ||||| ||||| || |||||||| | | |||||||||| | |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
8609792 |
gttgctcaaacttcgcacgagtgattgatgaacaaaaatcaataccctcagatatagcatcaatatcaattgtggcctccgtgtcaaatgaaagtgtcct |
8609891 |
T |
|
| Q |
201 |
ttttgccttttcacaagcagttctcagcctcct |
233 |
Q |
| |
|
|||||| | ||||||||||| |||| |||||| |
|
|
| T |
8609892 |
ctttgccctctcacaagcagtcctcaacctcct |
8609924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 243
Target Start/End: Complemental strand, 29577994 - 29577823
Alignment:
| Q |
72 |
catacacttttcaaagaggttcatattcatttcctcaaacttggcccgggttattgaggaacagaagtcaatacctttatatatagcatctagttcaatt |
171 |
Q |
| |
|
|||||| ||||||||||||| ||| || | | |||||| || ||||| || ||||| || |||||||||||||| | | |||||||||||| |||||| |
|
|
| T |
29577994 |
catacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatctatgtcaatt |
29577895 |
T |
|
| Q |
172 |
gtggcctcagtgtcgtatgaaagtgtcctttttgccttttcacaagcagttctcagcctccttaaggctttt |
243 |
Q |
| |
|
||||||||| |||| |||||||||| ||| |||||| | |||||||||||||||||| ||||||| |||||| |
|
|
| T |
29577894 |
gtggcctcaatgtcatatgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagctttt |
29577823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 29582234 - 29581992
Alignment:
| Q |
1 |
ccaacaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattca |
100 |
Q |
| |
|
|||| |||||| | ||||||||||||| ||||| |||| ||||||||| |||||| | |||| | | |||||| ||||||||||||| || || | |
|
|
| T |
29582234 |
ccaataaggacgatatcatctacactactcttgaccatgttagcatcacgtagacaactcccaacaatctccatacatttttcaaagaggtcgatgttga |
29582135 |
T |
|
| Q |
101 |
tttcctcaaacttggcccgggttattgaggaacagaagtcaatacctttatatatagcatctagttcaattgtggcctcagtgtcgtatgaaagtgtcct |
200 |
Q |
| |
|
||| ||||||||||||||| || | || || ||||| |||||||||| | | || ||||||| |||||||||| |||| |||| ||||||||||||| |
|
|
| T |
29582134 |
tttgctcaaacttggcccgagtaactggtgagcagaaatcaataccttgacaaatggcatctacgtcaattgtggtctcaatgtcaaatgaaagtgtcct |
29582035 |
T |
|
| Q |
201 |
ttttgccttttcacaagcagttctcagcctccttaaggctttt |
243 |
Q |
| |
|
|||||| | |||||||| ||||||||| ||||||| |||||| |
|
|
| T |
29582034 |
ctttgccctctcacaagctgttctcagcttccttaaagctttt |
29581992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 8383260 - 8383046
Alignment:
| Q |
10 |
acaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattcatttcctcaa |
109 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||| |||||| | | |||||| | ||||||||||||||| |||| |||||| | || ||||| |
|
|
| T |
8383260 |
acaacatcatctacactactcttgttcatcttagcatcagtaagacagctctcaacagtctccatacacttttcaaataggtccatattgagttgctcaa |
8383161 |
T |
|
| Q |
110 |
acttggcccgggttattgaggaacagaagtcaatacctttatatatagcatctagttcaattgtggcctcagtgtcgtatgaaagtgtcctttttgcctt |
209 |
Q |
| |
|
| |||||||| || | ||| ||| || |||||||| | ||| | |||||||| ||||| | ||||||| | || |||||||||||||||||||| | |
|
|
| T |
8383160 |
atttggcccgagtgactgaagaattaaaatcaataccctcatacagagcatctatgtcaatcgcggcctcaatatcaaatgaaagtgtcctttttgccct |
8383061 |
T |
|
| Q |
210 |
ttcacaagcagttct |
224 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
8383060 |
ctcgcaagccgttct |
8383046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 17267714 - 17267956
Alignment:
| Q |
1 |
ccaacaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattca |
100 |
Q |
| |
|
|||||||||||||||||||| || || ||||||| |||||||||||| |||||| | | |||| | | ||| |||| ||||| |||| |||||| | |
|
|
| T |
17267714 |
ccaacaaggacaacatcatcaactctgctcttgtcaatcttagcatcactaagacacttctcaacaatctccatgcactcatcaaaaaggtccatattga |
17267813 |
T |
|
| Q |
101 |
tttcctcaaacttggcccgggttattgaggaacagaagtcaatacctttatatatagcatctagttcaattgtggcctcagtgtcgtatgaaagtgtcct |
200 |
Q |
| |
|
|||||||||||||||| || || ||||| ||| | || |||| ||| ||| ||| ||| |||| |||| ||| | ||| | || | ||||||||||| |
|
|
| T |
17267814 |
tttcctcaaacttggcacgagtgattgacgaagaaaaatcaacacccttaaataaagcgtctacctcaacattggtcacagaggcgaaagaaagtgtcct |
17267913 |
T |
|
| Q |
201 |
ttttgccttttcacaagcagttctcagcctccttaaggctttt |
243 |
Q |
| |
|
|||||| |||||||| |||||||||| |||||| | ||||||| |
|
|
| T |
17267914 |
ttttgctttttcacatgcagttctcaacctcctcatggctttt |
17267956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 6789287 - 6789405
Alignment:
| Q |
1 |
ccaacaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattca |
100 |
Q |
| |
|
||||||||||||||||||| |||| || |||||||||||||||| ||| |||||||| | | ||| || |||||||||| | ||| | | |||||| | |
|
|
| T |
6789287 |
ccaacaaggacaacatcatttacaatactcttgtccatcttagcgtcaacaagacaactctcaacggtcttcatacactcattaaaaatatccatattga |
6789386 |
T |
|
| Q |
101 |
tttcctcaaacttggcccg |
119 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6789387 |
tttcctcaaacttggcccg |
6789405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 7878126 - 7877894
Alignment:
| Q |
1 |
ccaacaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattca |
100 |
Q |
| |
|
|||||||| ||||||||||||||| | |||||||||||| ||||||||| ||||||| | || ||| | || ||| |||||||| || | |||||| | |
|
|
| T |
7878126 |
ccaacaagtacaacatcatctacattgttcttgtccatcatagcatcagtaagacaactcttgacaatcgccaaacaattttcaaaaagatccatattga |
7878027 |
T |
|
| Q |
101 |
tttcctcaaacttggcccgggttattgaggaacagaagtcaatacctttatatatagcatctagttcaattgtggcctcagtgtcgtatgaaagtgtcct |
200 |
Q |
| |
|
|| ||||||||||||||| ||| | | | ||||||||| || | | ||||||||||| |||||||| | |||||| || |||| |||||||| |
|
|
| T |
7878026 |
gttgctcaaacttggcccgacttaataacatattgaagtcaattccgtcgtgtatagcatctatgtcaattgtagtctcagtatcaaatgacagtgtcct |
7877927 |
T |
|
| Q |
201 |
ttttgccttttcacaagcagttctcagcctcct |
233 |
Q |
| |
|
||| ||| | ||||| |||||||||| |||||| |
|
|
| T |
7877926 |
tttagccctctcacatgcagttctcaacctcct |
7877894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 8590413 - 8590645
Alignment:
| Q |
1 |
ccaacaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattca |
100 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||||||||||||||||| ||| | |||| | || ||| | | || ||||||||||||||| | | | || | |
|
|
| T |
8590413 |
ccaacaagtacaacatcatctacaatgttcttgtccatcttagcattagccaaacaattcttgacaatctccaaacacttttcaaagagatccctgttaa |
8590512 |
T |
|
| Q |
101 |
tttcctcaaacttggcccgggttattgaggaacagaagtcaatacctttatatatagcatctagttcaattgtggcctcagtgtcgtatgaaagtgtcct |
200 |
Q |
| |
|
|| |||||||||||||| || | | | || |||||||| || | |||||||||||||| | ||||| |||||||| || ||||| |||||||| |
|
|
| T |
8590513 |
gttgttcaaacttggcccgagtgactaataaatggaagtcaactccctcatatatagcatctatgccgattgttgcctcagtatcatatgacagtgtcct |
8590612 |
T |
|
| Q |
201 |
ttttgccttttcacaagcagttctcagcctcct |
233 |
Q |
| |
|
||| ||| | |||||||| ||| ||| |||||| |
|
|
| T |
8590613 |
tttagccctctcacaagctgttttcaacctcct |
8590645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 17260205 - 17260258
Alignment:
| Q |
190 |
gaaagtgtcctttttgccttttcacaagcagttctcagcctccttaaggctttt |
243 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| |||||||||||||||| |
|
|
| T |
17260205 |
gaaagtgtcctttttgctttttcacatgcagttctcaacctccttaaggctttt |
17260258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 8586096 - 8585986
Alignment:
| Q |
4 |
acaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattcattt |
103 |
Q |
| |
|
|||||||||| ||| ||||||| |||||| || ||||||| ||| | ||||||| | | ||||||||| ||||||| | ||| |||| |||||| |||| |
|
|
| T |
8586096 |
acaaggacaatatcgtctacaccattcttctctatcttagaatcggtaagacaactctcaacagtatttatacactcattaaaaaggtccatattgattt |
8585997 |
T |
|
| Q |
104 |
cctcaaacttg |
114 |
Q |
| |
|
||||||||||| |
|
|
| T |
8585996 |
cctcaaacttg |
8585986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 8601749 - 8601894
Alignment:
| Q |
1 |
ccaacaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattca |
100 |
Q |
| |
|
|||||||||||| ||||||| |||||| |||| || |||| ||||||| ||||||| | | |||||| | |||||||| | |||||||| || ||| | |
|
|
| T |
8601749 |
ccaacaaggacagcatcatccacactactcttttcgatctgagcatcactaagacaactttcaacagtctctatacacttcttaaagaggtccacattga |
8601848 |
T |
|
| Q |
101 |
tttcctcaaacttggcccgggttattgaggaacagaagtcaatacc |
146 |
Q |
| |
|
|| ||||||||||||||| || ||||| ||| ||| |||||||| |
|
|
| T |
8601849 |
gttgctcaaacttggcccgagtgattgatgaatggaaatcaatacc |
8601894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 27831268 - 27831156
Alignment:
| Q |
1 |
ccaacaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattca |
100 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||| |||| |||||| | | |||||| | |||||| | | || |||| |||||| | |
|
|
| T |
27831268 |
ccaacaaggacaacatcatctatactactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattga |
27831169 |
T |
|
| Q |
101 |
tttcctcaaactt |
113 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27831168 |
tttcctcaaactt |
27831156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 8616459 - 8616568
Alignment:
| Q |
4 |
acaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattcattt |
103 |
Q |
| |
|
||||| |||| ||||||||||||| |||| || ||||||| |||| || |||| | | |||||| || ||||||| | ||| |||| |||||| |||| |
|
|
| T |
8616459 |
acaagaacaatatcatctacactactcttctctatcttagaatcattaaaacaactctcaacagtctttatacactcgttaaaaaggtccatattgattt |
8616558 |
T |
|
| Q |
104 |
cctcaaactt |
113 |
Q |
| |
|
|||||||||| |
|
|
| T |
8616559 |
cctcaaactt |
8616568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 12528279 - 12528521
Alignment:
| Q |
1 |
ccaacaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattca |
100 |
Q |
| |
|
|||||||| |||| ||||||||||||| ||||||||||||||||||| | | |||| | | ||| || | |||||||||||||||||||| |||||||| |
|
|
| T |
12528279 |
ccaacaagtacaatatcatctacactactcttgtccatcttagcatcggtcaaacaactttcaacggtctccatacacttttcaaagaggtccatattca |
12528378 |
T |
|
| Q |
101 |
tttcctcaaacttggcccgggttattgaggaacagaagtcaatacctttatatatagcatctagttcaattgtggcctcagtgtcgtatgaaagtgtcct |
200 |
Q |
| |
|
|| ||| |||||||| || || ||||| || ||||||||||| || | | |||||||||||| |||||||| ||||| || ||||||||||||||||| |
|
|
| T |
12528379 |
gttgctcgaacttggctcgagtgattgatgagcagaagtcaatgccctcacatatagcatctatgtcaattgtagcctctgtatcgtatgaaagtgtcct |
12528478 |
T |
|
| Q |
201 |
ttttgccttttcacaagcagttctcagcctccttaaggctttt |
243 |
Q |
| |
|
||| ||||| || || |||||||| ||||||| ||||||| |
|
|
| T |
12528479 |
tttcgccttctcgcagttagttctcaatctccttagggctttt |
12528521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 14703186 - 14703425
Alignment:
| Q |
4 |
acaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattcattt |
103 |
Q |
| |
|
||||| |||||||||||||| ||| |||||||||||||||||||| ||||||| | | |||| | |||| ||||| | ||| | || ||||||||||| |
|
|
| T |
14703186 |
acaagaacaacatcatctactctactcttgtccatcttagcatcaataagacaactctcaacaatcttcacacactcattaaaaaagtccatattcattt |
14703285 |
T |
|
| Q |
104 |
cctcaaacttggcccgggttattgaggaacagaagtcaatacctttatatatagcatctagttcaattgtggcctcagtgtcgtatgaaagtgtcctttt |
203 |
Q |
| |
|
| ||||||||||||| | || || ||| | |||||||| | || | ||| |||||||| ||||| ||||| || | | | |||||||| ||||| |
|
|
| T |
14703286 |
cttcaaacttggccctattgatcgatgaagaaaagtcaatgcattgaaataaagcatctacctcaatagtggcgacaacttggaaagaaagtgttctttt |
14703385 |
T |
|
| Q |
204 |
tgccttttcacaagcagttctcagcctccttaaggctttt |
243 |
Q |
| |
|
|||| | || ||||| ||||||| ||||||||||||||| |
|
|
| T |
14703386 |
tgccctctcgcaagcggttctcaagctccttaaggctttt |
14703425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 16662193 - 16662146
Alignment:
| Q |
193 |
agtgtcctttttgccttttcacaagcagttctcagcctccttaaggct |
240 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||| |||||| |||||| |
|
|
| T |
16662193 |
agtgtccttttcgccttttcacaagaagttctcaacctcctcaaggct |
16662146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 12258971 - 12258901
Alignment:
| Q |
4 |
acaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcat |
74 |
Q |
| |
|
||||||||||||||||||||| || |||||||| | |||||||| | ||||||| | | |||||| ||||| |
|
|
| T |
12258971 |
acaaggacaacatcatctacattactcttgtccgtgttagcatccgtaagacaactctcaacagtcttcat |
12258901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 7542190 - 7542243
Alignment:
| Q |
190 |
gaaagtgtcctttttgccttttcacaagcagttctcagcctccttaaggctttt |
243 |
Q |
| |
|
||||||| ||||||||| | |||||||||||||||| |||||| ||||||||| |
|
|
| T |
7542190 |
gaaagtgatctttttgccctctcacaagcagttctcaacctcctcaaggctttt |
7542243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 11999380 - 11999424
Alignment:
| Q |
199 |
ctttttgccttttcacaagcagttctcagcctccttaaggctttt |
243 |
Q |
| |
|
||||||||| | |||||||||||||||| |||||| ||||||||| |
|
|
| T |
11999380 |
ctttttgccctctcacaagcagttctcaacctcctcaaggctttt |
11999424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 30775030 - 30775169
Alignment:
| Q |
4 |
acaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattcattt |
103 |
Q |
| |
|
||||| |||| ||||||||||||| ||||||| | ||| | ||||| ||||||| | | |||||| | ||||||| | ||| |||| |||||| |||| |
|
|
| T |
30775030 |
acaagaacaatatcatctacactactcttgtctacctttgaatcagtaagacaactctcaacagtctgtatacactcattaaaaaggtccatattgattt |
30775129 |
T |
|
| Q |
104 |
cctcaaacttggcccgggttattgaggaacagaagtcaat |
143 |
Q |
| |
|
||||||||||| | || || ||||| ||| | |||||||| |
|
|
| T |
30775130 |
cctcaaacttgacacgagtgattgatgaagaaaagtcaat |
30775169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 23596978 - 23596932
Alignment:
| Q |
1 |
ccaacaaggacaacatcatctacactattcttgtccatcttagcatc |
47 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
23596978 |
ccaacaagaacaacatcatcaacactgttcttatccatcttagcatc |
23596932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 30775219 - 30775252
Alignment:
| Q |
193 |
agtgtcctttttgccttttcacaagcagttctca |
226 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
30775219 |
agtgtcctttttgccttttcacatgcagttctca |
30775252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 34467178 - 34467125
Alignment:
| Q |
4 |
acaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaa |
57 |
Q |
| |
|
||||||||| |||||| |||||| || ||||||||||||||||| |||||||| |
|
|
| T |
34467178 |
acaaggacagcatcatgcacactactcgtgtccatcttagcatcaacaagacaa |
34467125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 15594809 - 15594865
Alignment:
| Q |
1 |
ccaacaaggacaacatcatctacactattcttgtccatcttagcatcagcaagacaa |
57 |
Q |
| |
|
||||||| ||||| ||||| ||||||| |||| | ||||||||||||| |||||||| |
|
|
| T |
15594809 |
ccaacaatgacaatatcatttacactactcttattcatcttagcatcatcaagacaa |
15594865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 52549336 - 52549288
Alignment:
| Q |
70 |
ttcatacacttttcaaagaggttcatattcatttcctcaaacttggccc |
118 |
Q |
| |
|
|||||||||| | ||| |||| |||||||||||||||||||||||||| |
|
|
| T |
52549336 |
ttcatacactccttaaaaaggtccatattcatttcctcaaacttggccc |
52549288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University