View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11566_high_3 (Length: 516)
Name: NF11566_high_3
Description: NF11566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11566_high_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 26058551 - 26059012
Alignment:
| Q |
1 |
tatgattaaagtcttactttattttcaattgttatgatcattataattgttttagatcctaggtttgacaaacctaaatatctatgtatgtcctctaggt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26058551 |
tatgattaaagtcttactttattttcaattgttatgatcattataattgttttaaaccctaggtttgacaaacctaaatatctatgtatgtcctctaggt |
26058650 |
T |
|
| Q |
101 |
taaggtatatcaatgaagatcttgctttaacccgaacaagaacaatataaactttacttaatcatctttaattaattagggttaattagagattttataa |
200 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||||||| || |
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| T |
26058651 |
taaggtataagaatgaagatcttgctttaacccgaacaagaacaatataaactttgcttaattatctttaattaattaggattaattagggattttacaa |
26058750 |
T |
|
| Q |
201 |
tgtgggtaaattatccaccattttttaaatgcgatctaggcttcaccagaaagatttcatgtattttctaatgccgttaccaaaagttccaaacacccta |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
26058751 |
tgtgggt-aattatccaccattttttaaatgcgatctaggcttcaccagaaagatttca-atattttctaatgcctttaccaaaagttccaaacacccta |
26058848 |
T |
|
| Q |
301 |
acattgcacaaaagccactattgcatatatgaaa----gtgacatttggtaggtaacattcataaaaatgttactatctaacaatatttgaaacattttn |
396 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26058849 |
acattgcataaaagccactattgcatatatgaaattatgtgacatttggtaggtaacattcataaaaatgttactatttaacaatatttgaaacatttaa |
26058948 |
T |
|
| Q |
397 |
nnnnnnntgttattaacaccattacactttttagttcatttaaacaatataaaaggtgtttcat |
460 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26058949 |
aaaaaaatgttattaacaccattacactttttagttcatttaaacaatataaaaggtgtttcat |
26059012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 26118838 - 26119297
Alignment:
| Q |
1 |
tatgattaaagtcttactttattttcaattgttatgatcattataattgttttagatcctaggtttgacaaacctaaatatctatgtatgtcctctaggt |
100 |
Q |
| |
|
|||||| ||| || || |||||||||||||||| ||||| | |||||| || |||| || |||||||| || ||||||| |||||||||||||| ||| | |
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|
| T |
26118838 |
tatgatcaaaatcatattttattttcaattgttctgatcgtcataattcttctagacccaaggtttgataaccctaaatgtctatgtatgtcctatagat |
26118937 |
T |
|
| Q |
101 |
taaggtatatcaatgaagatcttgctttaacccgaacaagaacaatataaactttacttaatcatctttaattaattagggttaattagagattttataa |
200 |
Q |
| |
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||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||| || |
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| T |
26118938 |
taaggtataagaatgatgatcttgctttaacctgaacaagaacaatataaactttgcttaattatctttaattaattatggttaattagagattttacaa |
26119037 |
T |
|
| Q |
201 |
tgtgggtaaattatccaccattttttaaatgcgatctaggcttcaccagaaagatttcatgtattttctaatgccgttaccaaaagttccaaacacccta |
300 |
Q |
| |
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||||||||||| || ||||||||||| | |||||| | ||| || |||||||||||||||||||||||||| |||| |||||||||||| || || |
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| T |
26119038 |
cgtgggtaaattgcacatcattttttaaaggtaatctagacctcatcataaagatttcatgtattttctaatgcctttactcaaagttccaaaccccgta |
26119137 |
T |
|
| Q |
301 |
acattgcacaaaagccactattgcatatatga----aagtgacatttggtaggtaacattcataaaaatgttactatctaacaatatttgaaacattttn |
396 |
Q |
| |
|
||||||||||||| |||||| | ||||||| | || ||||||| | |||||||| ||||||||||| ||| | | |||| || ||| ||||| |
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|
| T |
26119138 |
acattgcacaaaatccactactacatatataacatttagcaacatttgatcggtaacatacataaaaatgtcactttttcgcaattcttaaaatattttt |
26119237 |
T |
|
| Q |
397 |
nnnnnnntgttattaacaccattacactttttagttcatttaaacaatataaaaggtgtt |
456 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||| |||||| |||| |
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|
| T |
26119238 |
caaaaaaacttatcaacaccattacactttttaattcatttaaacaatgtaaaagttgtt |
26119297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 26082929 - 26083231
Alignment:
| Q |
18 |
tttattttcaattgttatgatcattataattgttttagatcctaggtttgacaaacctaaatatctatgtatgtcctctaggttaaggtatatcaatgaa |
117 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| || |||| |||||||||| ||| ||||| ||||||| ||||||||||| ||||||||||| ||||| |
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|
| T |
26082929 |
tttattttcaattgttctgatcgttataattcttctagaccctaggtttggcaaccctaattatctatttatgtcctctaagttaaggtataagaatgac |
26083028 |
T |
|
| Q |
118 |
gatcttgctttaacccgaacaagaacaatataaactttacttaatcatctttaattaattagggttaattagagattttataatgtgggtaaattatcca |
217 |
Q |
| |
|
||| |||||||||| |||| |||||||||||||||||| |||||| |||||||| ||||||||||||||||| ||||| |||||| |||||||||| ||| |
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| T |
26083029 |
gattttgctttaactcgaataagaacaatataaactttgcttaattatctttaagtaattagggttaattagggatttcataatgcgggtaaattaccca |
26083128 |
T |
|
| Q |
218 |
ccattttttaaatgcgatctaggcttcaccagaaagatttcatgtattttctaatgccgttaccaaaagttccaaacaccctaacattgcacaaaagcca |
317 |
Q |
| |
|
|||||||||||| || |||||||||||||| |||||||||||||||||||| |||| |||| ||||| |||| |||||||||||||||||| |
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|
| T |
26083129 |
ccattttttaaaggcaatctaggcttcacc--------ttcatgtattttctaatgcctttactcaaaggtccaa--acccgaacattgcacaaaagcca |
26083218 |
T |
|
| Q |
318 |
ctattgcatatat |
330 |
Q |
| |
|
||| | ||||||| |
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|
| T |
26083219 |
ctactccatatat |
26083231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 496
Target Start/End: Original strand, 26059039 - 26059076
Alignment:
| Q |
459 |
atatatataaataaggtgttgagtacatgtgtcacatg |
496 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||| |
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| T |
26059039 |
atatatatataaaaggtgttgagtacatgtgtcacatg |
26059076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 23946206 - 23946034
Alignment:
| Q |
9 |
aagtcttactttattttcaattgttatgatcattataattgttttagatcctaggtttgacaaacctaaatatctatgtatgtcctctaggttaaggtat |
108 |
Q |
| |
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|||||||| || | ||||||||||| |||||||||||| ||||| | | ||||| | |||| |||| ||||||||||||| |||||||||||| | | |
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| T |
23946206 |
aagtcttatttaactttcaattgtttcgatcattataatgcttttaaaccttaggtctaacaaccctagatatctatgtatgcgctctaggttaagttgt |
23946107 |
T |
|
| Q |
109 |
atcaatgaagatcttgctttaacccgaacaagaacaatataaactttacttaatcatctttaattaattaggg |
181 |
Q |
| |
|
| ||||| ||||| |||||||||| |||| |||||| |||||| | || || | ||||||||||||||| |
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|
| T |
23946106 |
aagaatgacagccttgccttaacccgaagaagagcaatatgaacttttcatattcgtatttaattaattaggg |
23946034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 240829 - 240734
Alignment:
| Q |
87 |
tatgtcctctaggttaaggtatatcaatgaagatcttgctttaacccgaacaagaacaatataaactttacttaatcatctttaattaattagggtt |
183 |
Q |
| |
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|||| |||||||||||||||||| |||| || |||||||||||| ||||| |||| | ||| || |||||||||| |||||||||||||||| |
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| T |
240829 |
tatgccctctaggttaaggtataataatgtcgaccttgctttaaccgaaacaaaaacatattgaacattgcttaatcatc-ttaattaattagggtt |
240734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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