View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11566_high_5 (Length: 470)
Name: NF11566_high_5
Description: NF11566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11566_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 118 - 459
Target Start/End: Complemental strand, 55697099 - 55696758
Alignment:
| Q |
118 |
aatttgattatcaacttcctcaagctatatttaatttatccaggatctcttaatctaggttgttattgcgtgctcagatattttgttctgcaatgttttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
55697099 |
aatttgattatcaacttcctcaagctatatttaatttatccaggatctcttaatctaggttgttattgcgtcctcagatattttgttctgcaatgttttt |
55697000 |
T |
|
| Q |
218 |
ctaacaactttatatatcaagatttgataagagatgctgctcagtttttacatttcatattttaacagtctgtttgaaaaaacttggcagatagtgggga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55696999 |
ctaacaactttatatatcaagatttgataagagatgctgctcagtttttacatttcatattttaacagtctgtttgaaaaaacttggcagatagtgggga |
55696900 |
T |
|
| Q |
318 |
gaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcgtggtttgggttcccgtctccacat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55696899 |
gaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcgtggtttgggttcccgtctccacat |
55696800 |
T |
|
| Q |
418 |
ttacaagtcccatgaatctggggatcgttttccttcatctca |
459 |
Q |
| |
|
|||||||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
55696799 |
ttacaagtcccatgaatccggtgatcgtcttccttcatctca |
55696758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 55697453 - 55697407
Alignment:
| Q |
118 |
aatttgattatcaacttcctcaagctatatttaatttatccaggatc |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55697453 |
aatttgattatcaacttcctcaagctatatttaatttatccaggatc |
55697407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 32012114 - 32012017
Alignment:
| Q |
19 |
atgcttgagccaataaagacaacttatatctagggcctgtctgaacgatgactcatgcatcctccctcgtacacctcatgcaaagccttcaacttctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
32012114 |
atgcttgagccaataaagacaacttatatctagggcctgtctaaacaatgactcatgcatcctcccctgttcccctcatgcaaagccttcaacttctt |
32012017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 295 - 406
Target Start/End: Complemental strand, 9235337 - 9235226
Alignment:
| Q |
295 |
aaaaacttggcagatagtggggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcgt |
394 |
Q |
| |
|
||||||||||||||| || ||||||||| |||| || ||||||| |||||||| ||||||||||| ||||||||| |||||||||||||||| || ||| |
|
|
| T |
9235337 |
aaaaacttggcagatcgtcgggagaatgtcagcagagcaaaagaaagttcttctgttcttttggacatctgtgaaacatttaccagttgaaggtttccgt |
9235238 |
T |
|
| Q |
395 |
ggtttgggttcc |
406 |
Q |
| |
|
|| ||| ||||| |
|
|
| T |
9235237 |
ggcttgagttcc |
9235226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 297 - 387
Target Start/End: Complemental strand, 9246920 - 9246830
Alignment:
| Q |
297 |
aaacttggcagatagtggggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaagg |
387 |
Q |
| |
|
||||||||||||| || ||||||||| |||| || |||||||||||||||| ||||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
9246920 |
aaacttggcagatcgttgggagaatgccagcagagcaaaagaaggttcttctgttcttctggacatctgtgaaacatttaccagttgaagg |
9246830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 401
Target Start/End: Complemental strand, 9255080 - 9254973
Alignment:
| Q |
294 |
aaaaaacttggcagatagtggggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcg |
393 |
Q |
| |
|
|||||||||||||||| || || |||||| |||| || ||| |||||||||||| ||||||||||| ||||||||| ||||||||||| |||| || | |
|
|
| T |
9255080 |
aaaaaacttggcagatcgttggaagaatgtcagcagagcaaaggaaggttcttctgttcttttggacatctgtgaaacatttaccagttaaaggtttcca |
9254981 |
T |
|
| Q |
394 |
tggtttgg |
401 |
Q |
| |
|
|||||||| |
|
|
| T |
9254980 |
tggtttgg |
9254973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 387
Target Start/End: Complemental strand, 9265047 - 9264993
Alignment:
| Q |
333 |
aaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaagg |
387 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||| |||||||||| ||||| |
|
|
| T |
9265047 |
aaaagaaggttcttctgttcttttggacatcagtgaaacatttaccagtcgaagg |
9264993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University