View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11566_high_9 (Length: 342)
Name: NF11566_high_9
Description: NF11566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11566_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 19851218 - 19850902
Alignment:
| Q |
1 |
cagaatgaaagagtaggtggtggacacaccaagagcaaagtgttgaatgggagcaacattagccataccccatctcatgcaatctaaccaaatctcacaa |
100 |
Q |
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| T |
19851218 |
cagaatgaaagagtaggtggtggacacaccaagagcaaagtgttgaatgggagcaa-----gccataccccatctcatgcaatctaaccaaatctcacaa |
19851124 |
T |
|
| Q |
101 |
gaacaattatcaaccatttt--atttcgttggtgtgatagattatcttttttcccatcttagtttcctcttagnnnnnnncagatatgtacttgacaact |
198 |
Q |
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| T |
19851123 |
gaacaagtatcaaccattttttatttggttggtatgatagattatcttttttcccatctttgtttcctcttagaaaaaaacagatatgtacttgacaact |
19851024 |
T |
|
| Q |
199 |
ttcagccttatccccatgtattgcagtagtagtccacatcagt---gatggttaatttgctctattatatataaggttgaaaagctaaatctcaattggt |
295 |
Q |
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| T |
19851023 |
ttcagccttatccccatgtattgcagtagt---ccacatcagtactgatggttaatttgctctattatata--aggttgaaaagctaaatctcaattggt |
19850929 |
T |
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| Q |
296 |
agaggagaacacgacttaggagcccac |
322 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
19850928 |
agaggagaacacgacttaggagcccac |
19850902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 322
Target Start/End: Original strand, 45503871 - 45504180
Alignment:
| Q |
5 |
atgaaagagtaggtggtggacacaccaagagcaaagtgttgaatgggagcaacattagccataccccatctcatgcaatctaaccaaatctcacaagaac |
104 |
Q |
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| T |
45503871 |
atgaaagagtaggtggtggacacaccaagagcaaagtgttgaatgggagcaa-----gccataccccatctcatgcaatctaaccaaatctcacaagaac |
45503965 |
T |
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| Q |
105 |
aattatcaacca--ttttatttcgttggtgtgatagattatcttttttcccatcttagtttcctcttagnnnnnnncagatatgtacttgacaactttca |
202 |
Q |
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|| ||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
45503966 |
aagtatcaaccattttttatttggttggtatgatagattatcttttttcccatcttagtttcctcttagaaaaaaacagatatgtacttgacaaccttca |
45504065 |
T |
|
| Q |
203 |
gccttatccccatgtattgcagtagtagtccacatcagtgatggttaatttgctctattatatataaggttgaaaagctaaatctcaattggtagaggag |
302 |
Q |
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| T |
45504066 |
gccttatccccatgtattgc---agtagtccacatcagtgatggttaatttgatctat--tatataaggttgaaaagctgaatctcaattggtagaggag |
45504160 |
T |
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| Q |
303 |
aacacgacttaggagcccac |
322 |
Q |
| |
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|||||||||||||||||||| |
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| T |
45504161 |
aacacgacttaggagcccac |
45504180 |
T |
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