View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11566_low_1 (Length: 589)
Name: NF11566_low_1
Description: NF11566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11566_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 4520681 - 4520377
Alignment:
| Q |
1 |
agacttttaatttcttcaattttcttcgtgccttccttgctagtcattgttcccttttattgaaggttaagagaatattcccatctgcaagacgtagaag |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4520681 |
agacttttaatttcttcagttttcttcgtgccttccttgctagtcattgttcccttttattgaaggttaagagaatattcccatctgcaagacgtagaag |
4520582 |
T |
|
| Q |
101 |
gcatcnnnnnnnatgcagaaatccccatctgtccaacaactcatatcgaatggggaggtggtgttcatactaaactgtatttgtgcacaactttctctgt |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4520581 |
gcatccggggggatgcagaaatccccatctgtccaacaactcatatcgaatggggaggtggtgttcatactaaactgtatttgtgcacaactttctctgt |
4520482 |
T |
|
| Q |
201 |
tttactgtcgttactttctctgttttcaatttttctacacctgtgtagactgagtttatgcataatggtgtaagtatctttttatctgtgttgatgtctt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4520481 |
tttactgtcgttactttctctgttttcaatttttctacacctgtgtagactgagtttatgcataatggtgtaagtatctttttatttgtgttgatgtctt |
4520382 |
T |
|
| Q |
301 |
gaaaa |
305 |
Q |
| |
|
||||| |
|
|
| T |
4520381 |
gaaaa |
4520377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 304 - 572
Target Start/End: Complemental strand, 4520345 - 4520077
Alignment:
| Q |
304 |
aaacaaatttataggaagtgtttactttgtttgtgataaattcatttatgttttagaatcattcaacgatccttaaaacaattataatggaaaattcaag |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4520345 |
aaacaaatttataggaagtgtttactttgtttgtgataaattcatttatgttttagaatcattcaacgatccttaaaacaattataatggaaagttcaag |
4520246 |
T |
|
| Q |
404 |
aatagttgtggtgtctgctactgtttgagacagacactgaatattaaactacttagaatgtatccatatgtctgtgtgagataagtataacatcggttaa |
503 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4520245 |
aacagttgtggtgtctgctactgtttgagacagacactgaatattaaactacttagaatgtatccatatgtctgtgtgagataagtataacatcggttaa |
4520146 |
T |
|
| Q |
504 |
ttttcatgatttctgtcacaaatttagcactcaaaagtagcaaaaaggtaacattgcttatgctatttt |
572 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
4520145 |
ttttcatgatttctgtcacaagtttagcactcaaaagtagcaaaaatgaaacattgcttatgctatttt |
4520077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 304 - 442
Target Start/End: Complemental strand, 8152567 - 8152424
Alignment:
| Q |
304 |
aaacaaatttataggaagtgtt-----tactttgtttgtgataaattcatttatgttttagaatcattcaacgatccttaaaacaattataatggaaaat |
398 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||| |||| |||||||||| ||||||| ||||||| || ||||| |||||||||||| | |
|
|
| T |
8152567 |
aaacaaatttatacgaagtgttctttatactttgtttgtgataagttcacttatgttttaaaatcattgaacgatcattgaaacagttataatggaaagt |
8152468 |
T |
|
| Q |
399 |
tcaagaatagttgtggtgtctgctactgtttgagacagacactg |
442 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8152467 |
tcaagaacagttgtggtgtctgctactgtttgagacagacactg |
8152424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 8152635 - 8152599
Alignment:
| Q |
269 |
tgtaagtatctttttatctgtgttgatgtcttgaaaa |
305 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8152635 |
tgtaagtatctttttatttgtgttgatgtcttgaaaa |
8152599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University