View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11566_low_13 (Length: 329)
Name: NF11566_low_13
Description: NF11566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11566_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 317
Target Start/End: Complemental strand, 48932452 - 48932155
Alignment:
| Q |
20 |
catcatcaacatagaggttcaaaaatccaagatcttcaacgacccagtaacgcaattagtttcaaaatccaaactttaaccaaacccacttctcaaaatc |
119 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48932452 |
catcatcaacatagagtttcaaaaatccaagatcttcaacgacccagtaacgcaattagtttcaaaatccaaactttaaccaaacccacttctcaaaatc |
48932353 |
T |
|
| Q |
120 |
taaactttcatatgcccacgtagtgaaatcagttatgggagctgnnnnnnnntggcttttcacgctattcagtgcagcagttttatctctaatgcttttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48932352 |
taaactttcatatgcccacgtagtgaaatcagttatgggagctgaaaaaaaatggcttttcacgctattcagtgcagcagttttatctctaatgcttttg |
48932253 |
T |
|
| Q |
220 |
ttaatgtcttctttttcaactttcagttctcaaaagccttttccatcttttgttcaacatggttctcattaccctcctgcttttgcatacttcatctc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48932252 |
ttaatgtcttctttttcaactttcagttctcaaaagccttttccatcttttgttcaacatggttctcattaccctcctgcttttgcatacttcatctc |
48932155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 20 - 311
Target Start/End: Original strand, 9392212 - 9392501
Alignment:
| Q |
20 |
catcatcaacatagaggttcaaaaatccaagatcttcaacgacccagtaacgcaattagtttcaaaatccaaactttaaccaaacccacttctcaaaatc |
119 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9392212 |
catcatcaacatagagtttcaaaaatccaagatcttcaatgacccattaacacaaatagtttcaaaatccaaactttaaccaa-cccacttctcaaaatc |
9392310 |
T |
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| Q |
120 |
taaactttcatatgcccacgtagtgaaatcagttatgggagctgnnnnnnnntggcttttcacgctattcagtgcagcagttttatctctaatgcttttg |
219 |
Q |
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|||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9392311 |
gttgatttcatatgcccacatagtgaaattagttatgggagctgaaaaaaa-tggcttttcacgctattcagtgtagcagttttatctctaatgcttttg |
9392409 |
T |
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| Q |
220 |
ttaatgtcttctttttcaactttcagttctcaaaagccttttccatcttttgttcaacatggttctcattaccctcctgcttttgcatactt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9392410 |
ttaatgtcttctttttcaactttcagttctcaaaagccttttccatctcttgttcaacatggttctcattaccctctggcttttgcatactt |
9392501 |
T |
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