View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11566_low_14 (Length: 324)
Name: NF11566_low_14
Description: NF11566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11566_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 31492543 - 31492840
Alignment:
| Q |
17 |
atctatatactccacaaccttatttgcaggctccaccaatgtatccacatgttaatccaagaccacaaaaacctaagaggagtcgttttgaaagattggg |
116 |
Q |
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| T |
31492543 |
atctatatactccacaaccttatttgcaggctccaccaatgtatccacatgttaatccaagaccacaaaaacctaagaggagtcgttttgaaagattggg |
31492642 |
T |
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| Q |
117 |
attaaaagtagggttgattggagttgcatgtgcaataaccagtggggtgactggagttgaacatatgatttatgatgcttttgttgg---nnnnnnnnnn |
213 |
Q |
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| T |
31492643 |
attaaaagtagggttgattggagttgcatgtgcaataaccagtggggtgactggagttgaacatatgatttatgatgcttttgttggtgatgatgatgat |
31492742 |
T |
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| Q |
214 |
nnnnnnnnggatggttttgaaacttaattgtttttacttttggaatatatattatatacctgctagcagatagactagacactctaacatgttcttct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
31492743 |
gatgatgaggatggttttgaaacttaattgtttttacttttggaatatatatcatatacctactagcagatagaatagacactctaacatgttcttct |
31492840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 31497932 - 31498229
Alignment:
| Q |
17 |
atctatatactccacaaccttatttgcaggctccaccaatgtatccacatgttaatccaagaccacaaaaacctaagaggagtcgttttgaaagattggg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31497932 |
atctatatactccacaaccttatttgcaggctccaccaatgtatccacatgttaatccaagaccacaaaaacctaagaggagtcgttttgaaagattggg |
31498031 |
T |
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| Q |
117 |
attaaaagtagggttgattggagttgcatgtgcaataaccagtggggtgactggagttgaacatatgatttatgatgcttttgttgg---nnnnnnnnnn |
213 |
Q |
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| T |
31498032 |
attaaaagtagggttgattggagttgcatgtgcaataaccagtggggtgactggagttgaacatatgatttatgatgcttttgttggtgatgatgatgat |
31498131 |
T |
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| Q |
214 |
nnnnnnnnggatggttttgaaacttaattgtttttacttttggaatatatattatatacctgctagcagatagactagacactctaacatgttcttct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
31498132 |
gatgatgaggatggttttgaaacttaattgtttttacttttggaatatatatcatatacctactagcagatagaatagacactctaacatgttcttct |
31498229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 31503319 - 31503616
Alignment:
| Q |
17 |
atctatatactccacaaccttatttgcaggctccaccaatgtatccacatgttaatccaagaccacaaaaacctaagaggagtcgttttgaaagattggg |
116 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31503319 |
atctatatactccacaaccttatttgcaggctccaccaatgtatccacatgttaatccaagaccacaaaaacctaagaggagtcgttttgaaagattggg |
31503418 |
T |
|
| Q |
117 |
attaaaagtagggttgattggagttgcatgtgcaataaccagtggggtgactggagttgaacatatgatttatgatgcttttgttgg---nnnnnnnnnn |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31503419 |
attaaaagtagggttgattggagttgcatgtgcaataaccagtggggtgactggagttgaacatatgatttatgatgcttttgttggtgatgatgatgat |
31503518 |
T |
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| Q |
214 |
nnnnnnnnggatggttttgaaacttaattgtttttacttttggaatatatattatatacctgctagcagatagactagacactctaacatgttcttct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
31503519 |
gatgatgaggatggttttgaaacttaattgtttttacttttggaatatatatcatatacctactagcagatagaatagacactctaacatgttcttct |
31503616 |
T |
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