View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11566_low_20 (Length: 241)
Name: NF11566_low_20
Description: NF11566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11566_low_20 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 26058332 - 26058556
Alignment:
| Q |
18 |
tgttgctgatcaaattggaggacaattctccgatgctgaatgttgcaggataaggtaagaaacccacattcaaatgtctaataaaagaacaaaataacaa |
117 |
Q |
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| T |
26058332 |
tgttgctgatcaaattggaggacaattctccgatgctgaatgttgcaggataaggtaagaaacccacattcaaatgtctaataaaagaacaaaataacaa |
26058431 |
T |
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| Q |
118 |
atgtgaaccggtcagagttgaagttagtagaagagcctgaagaggtaga-tttattcaagatgatgaacctatggagaagttagtaaaagaacaaattaa |
216 |
Q |
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| T |
26058432 |
aggtgaactggtcagagttgaagttagtagaagagcctgaagaggtagattttattcaagatgatgaacctatggagaagttagtaaaagaacaaattaa |
26058531 |
T |
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| Q |
217 |
tgcaatttatttattcaattatgat |
241 |
Q |
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| T |
26058532 |
tgcaatttatttattcaattatgat |
26058556 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 10702194 - 10702162
Alignment:
| Q |
209 |
caaattaatgcaatttatttattcaattatgat |
241 |
Q |
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| T |
10702194 |
caaattaatgcaatttatttattcagttatgat |
10702162 |
T |
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