View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11566_low_4 (Length: 471)
Name: NF11566_low_4
Description: NF11566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11566_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 52273319 - 52272859
Alignment:
| Q |
1 |
tttgtttttgagttccaaataagtcaaatagtttaatgtgttttgtttagaaacaagagatgctgcatttaaacctgttcctctggttcagaagcctatt |
100 |
Q |
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|||||||||||||| | ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52273319 |
tttgtttttgagtttccaataactcacatagtttaatgtgttttgtttagaaacaagagatgctgcatttaaacctgttcctctggttcagaagcctatt |
52273220 |
T |
|
| Q |
101 |
tcgtctatactggataaaattcgaaagaggaaattagaatttttaaagaagtaagtgggtttacatcaatattttgtttcagcatgcacttaattgggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52273219 |
tcgtctatactggataaaattcgaaagaggaaattagaatttttaaagaagtaagtgggtttacatcaatattttgtttcagcatgcacttaattgggat |
52273120 |
T |
|
| Q |
201 |
atttttactttagataaacactaatggatacttgggttgggtttcagatctaatgtttcttttcatgacaatgatggcttccatgtggatattgattctg |
300 |
Q |
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| T |
52273119 |
atttttactttagataaacactaatggatacttgggttgggtttcagatctaatgtttcttttcatgacaatgatggcttccatgtggatattgattctg |
52273020 |
T |
|
| Q |
301 |
agcctcgccccagtgaagagataactaataagattgaaaatgctgaatccgaagaaacaccagctacacgccctgcagagaatgatttaagcacactgca |
400 |
Q |
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| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52273019 |
atcctcgccctagtgaagagataactaataagattgaaaatgctgaatccgaagaaacaccagctacacgccctgcagagaatgatttaagcacactgca |
52272920 |
T |
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| Q |
401 |
tattgatggttccaccgatgctgcagatcattcgagccgtgaaagtattccttctcctatg |
461 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52272919 |
tattgatggttccaccgatgctgcagatcattcgagccgtgaaagtattccttctcctatg |
52272859 |
T |
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