View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11566_low_9 (Length: 368)
Name: NF11566_low_9
Description: NF11566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11566_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 5351943 - 5351728
Alignment:
| Q |
18 |
catcaccgttaaattttgctggaggctgaaacgcgtttaagaaaaactcgggtttattgatgaaatgaagatcaatgaaaacaccaatttggcggagatg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| |
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| T |
5351943 |
catcaccgttaaattttgctggaggctgaaacgcgtttaagaaaaactcgggtttattgatgaaatgaagatcgatgaaaactccaatttgtcggagatg |
5351844 |
T |
|
| Q |
118 |
gtagtgtgactttgctccaccatgtcctcctccaacactcactatggcagcagactttccagcccaaacatttggtggtcttgatgcccaatcaattgca |
217 |
Q |
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|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5351843 |
atagtgtgactttgcaccgccgtgtcctcctccaacactcactatggcagcagactttccagcccaaacatttggtggtcttgatgcccaatcaattgca |
5351744 |
T |
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| Q |
218 |
ttctttagtggggctg |
233 |
Q |
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||||||||||| |||| |
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| T |
5351743 |
ttctttagtggagctg |
5351728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 26 - 233
Target Start/End: Complemental strand, 5344917 - 5344710
Alignment:
| Q |
26 |
ttaaattttgctggaggctgaaacgcgtttaagaaaaactcgggtttattgatgaaatgaagatcaatgaaaacaccaatttggcggagatggtagtgtg |
125 |
Q |
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||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||| |||||| || ||||| |||||||| || |||| |
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| T |
5344917 |
ttaaattttgctggaggctgaaaagcatttaagaaaaattcgggtttatttatgaaatgaagatcaaggaaaactccgatttgtcggagatgatattgtg |
5344818 |
T |
|
| Q |
126 |
actttgctccaccatgtcctcctccaacactcactatggcagcagactttccagcccaaacatttggtggtcttgatgcccaatcaattgcattctttag |
225 |
Q |
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| T |
5344817 |
attttgcaccaccatgccctcctccagcactcactatggccgcaggtttaccagcccaaacatttggtgatcttgatgcccagtcaagtgcattctttag |
5344718 |
T |
|
| Q |
226 |
tggggctg |
233 |
Q |
| |
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||| |||| |
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| T |
5344717 |
tggagctg |
5344710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 62 - 233
Target Start/End: Original strand, 5325212 - 5325383
Alignment:
| Q |
62 |
aactcgggtttattgatgaaatgaagatcaatgaaaacaccaatttggcggagatggtagtgtgactttgctccaccatgtcctcctccaacactcacta |
161 |
Q |
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||||| ||||||||||||||||||| ||||| |||||| || |||||||||||||| | |||| ||| |||||||| |||||||||||||||| | |
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| T |
5325212 |
aactcaggtttattgatgaaatgaatatcaaggaaaaccccgatttggcggagatgatgctgtgcttttcctccaccaaaggctcctccaacactcacaa |
5325311 |
T |
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| Q |
162 |
tggcagcagactttccagcccaaacatttggtggtcttgatgcccaatcaattgcattctttagtggggctg |
233 |
Q |
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| T |
5325312 |
tggcagcaggctttccagcccaaacatttggtggtcttgatgcccaatcaattgcattctttagcggggctg |
5325383 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 62 - 228
Target Start/End: Original strand, 5338232 - 5338398
Alignment:
| Q |
62 |
aactcgggtttattgatgaaatgaagatcaatgaaaacaccaatttggcggagatggtagtgtgactttgctccaccatgtcctcctccaacactcacta |
161 |
Q |
| |
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||||| ||||||||||||||||||| ||||| |||||| || |||||||||||||| | || | ||| |||||||| |||||||||||||||||| |
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| T |
5338232 |
aactcaggtttattgatgaaatgaatatcaaggaaaaccccgatttggcggagatgatgttgagcttttcctccaccaaaggctcctccaacactcacta |
5338331 |
T |
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| Q |
162 |
tggcagcagactttccagcccaaacatttggtggtcttgatgcccaatcaattgcattctttagtgg |
228 |
Q |
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|
| T |
5338332 |
tggcagcagttttaccagcccatacatttggtggtcttgatccccaatcaagtgcattctttagtgg |
5338398 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 297 - 368
Target Start/End: Complemental strand, 5351664 - 5351593
Alignment:
| Q |
297 |
catgatgttgacttacctgagacagaataattatattcaggagaagcaaagagaacactatcagcagcaaga |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5351664 |
catgatgttgacttacctgagacagaataattatattcaggagaagcaaagagaacactatcagcagcaaga |
5351593 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 5325456 - 5325520
Alignment:
| Q |
297 |
catgatgttgacttacctgagacagaataattatattcaggagaagcaaagagaacactatcagc |
361 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5325456 |
catgatgtttacttacctgagacagaataattatactcaggagaagcaaagagaacactatcagc |
5325520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 5343879 - 5343815
Alignment:
| Q |
297 |
catgatgttgacttacctgagacagaataattatattcaggagaagcaaagagaacactatcagc |
361 |
Q |
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||||||||| || ||||||| ||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
5343879 |
catgatgtttacctacctgaaacagaataattattttcaggagaagcaaagagaaagctatcagc |
5343815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 14535529 - 14535575
Alignment:
| Q |
176 |
ccagcccaaacatttggtggtcttgatgcccaatcaattgcattctt |
222 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14535529 |
ccagcccaaacatttggtggtctagatgcccaatcaattgcattctt |
14535575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 14536649 - 14536700
Alignment:
| Q |
310 |
tacctgagacagaataattatattcaggagaagcaaagagaacactatcagc |
361 |
Q |
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|||||| |||||| || ||||| |||||||||||||| |||||||||||||| |
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| T |
14536649 |
tacctgtgacagagtagttatactcaggagaagcaaaaagaacactatcagc |
14536700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 14535415 - 14535479
Alignment:
| Q |
62 |
aactcgggtttattgatgaaatgaagatcaatgaaaacaccaatttggcggagatggtagtgtga |
126 |
Q |
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||||| ||||||||||||||||||||||| || ||| |||| |||||| ||||| |||||||| |
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|
| T |
14535415 |
aactcaggtttattgatgaaatgaagatcgatataaattccaacttggcgtagatgatagtgtga |
14535479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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