View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11567_high_10 (Length: 344)

Name: NF11567_high_10
Description: NF11567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11567_high_10
NF11567_high_10
[»] chr3 (19 HSPs)
chr3 (20-341)||(5249151-5249472)
chr3 (20-341)||(4389666-4389987)
chr3 (20-337)||(5267042-5267359)
chr3 (111-334)||(5262773-5262996)
chr3 (111-334)||(5279649-5279872)
chr3 (47-337)||(6839663-6839956)
chr3 (47-167)||(8569713-8569836)
chr3 (104-336)||(5297718-5297950)
chr3 (111-164)||(6480802-6480855)
chr3 (111-164)||(6520982-6521035)
chr3 (111-164)||(6527722-6527775)
chr3 (111-164)||(6555288-6555341)
chr3 (113-196)||(6899222-6899305)
chr3 (111-197)||(6237886-6237972)
chr3 (181-335)||(7586851-7587005)
chr3 (202-343)||(8470538-8470679)
chr3 (111-167)||(7749165-7749221)
chr3 (111-196)||(6592163-6592248)
chr3 (111-164)||(6735116-6735169)
[»] chr7 (1 HSPs)
chr7 (111-275)||(6574145-6574309)
[»] scaffold0425 (1 HSPs)
scaffold0425 (111-164)||(8327-8380)
[»] scaffold1643 (1 HSPs)
scaffold1643 (181-335)||(1147-1301)


Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 5249472 - 5249151
Alignment:
Q  20 atctagacctatcttacacaagaattgaaagtttgcctgattccatttgtaacctatataatttacaaacactgctattgaaaaattgtccattgactga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5249472 atctagacctatcttacacaagaattgaaagtttgcctgattccatttgtaacctatataatttacaaacactgctattgaaaaattgtccattgactga 5249373  T
Q  120 gctcccttcagatttttacaaacttagcaatttacgtcatcttgatctggaaagaactcacataaagatgatgccaaaagatatagggaggctaacccat 219  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5249372 gctcccttcagatttttacaaacttagcaatttacatcatcttgatctggaaagaactcacataaagatgatgccaaaagatatagggaggctaacccat 5249273  T
Q  220 cttcagacgttgactaaatttgctgtggtaaaggagcatgggtatgatattaaggaattgacagaactcaaccagcttcaagggaaactttgtatttcag 319  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  5249272 cttcagacgttgactaaatttgttgtggtaaaggagcatgggtatgatattaaggagttgacggaactcaaccagcttcaagggaaactttgtatttcag 5249173  T
Q  320 ggttagaaaatgtcattattcc 341  Q
    ||||||||||||||||||||||    
T  5249172 ggttagaaaatgtcattattcc 5249151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 20 - 341
Target Start/End: Original strand, 4389666 - 4389987
Alignment:
Q  20 atctagacctatcttacacaagaattgaaagtttgcctgattccatttgtaacctatataatttacaaacactgctattgaaaaattgtccattgactga 119  Q
    ||||||||||||||  |||||  ||| |||| ||||||||||||||||||||||||||||||||||| ||||| ||||||  | |||||||||| |||||    
T  4389666 atctagacctatctctcacaaagattaaaaggttgcctgattccatttgtaacctatataatttacagacactactattggcatattgtccattaactga 4389765  T
Q  120 gctcccttcagatttttacaaacttagcaatttacgtcatcttgatctggaaagaactcacataaagatgatgccaaaagatatagggaggctaacccat 219  Q
    ||||||||||||||||||||||||||  || ||||||||||||||||||||| | ||||  ||||||| |||||||||||| ||||||||||||| ||||    
T  4389766 gctcccttcagatttttacaaacttacaaacttacgtcatcttgatctggaaggcactcttataaagaagatgccaaaagagatagggaggctaaaccat 4389865  T
Q  220 cttcagacgttgactaaatttgctgtggtaaaggagcatgggtatgatattaaggaattgacagaactcaaccagcttcaagggaaactttgtatttcag 319  Q
    ||||||||  |||||||||||| |||||||||||| ||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  4389866 cttcagactctgactaaatttgttgtggtaaaggaccatgggtctgatattaaggagttgacggaactcaaccagcttcaagggaaactttgtatttcag 4389965  T
Q  320 ggttagaaaatgtcattattcc 341  Q
    ||||||||||||||||||||||    
T  4389966 ggttagaaaatgtcattattcc 4389987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 337
Target Start/End: Complemental strand, 5267359 - 5267042
Alignment:
Q  20 atctagacctatcttacacaagaattgaaagtttgcctgattccatttgtaacctatataatttacaaacactgctattgaaaaattgtccattgactga 119  Q
    |||||||||| |||  |||||  ||| |||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||  | ||||| ||||||| ||    
T  5267359 atctagacctgtctctcacaaagattaaaaggttgcctgattccatttgtaacctgtataatttacagacactactattggcatattgttcattgaccga 5267260  T
Q  120 gctcccttcagatttttacaaacttagcaatttacgtcatcttgatctggaaagaactcacataaagatgatgccaaaagatatagggaggctaacccat 219  Q
    ||||||||||||||||||||||||||  || ||||||||||||||||||||| | ||||| ||||||| |||||||||||| ||||||||||||||||||    
T  5267259 gctcccttcagatttttacaaacttacaaacttacgtcatcttgatctggaatgcactcatataaagaagatgccaaaagagatagggaggctaacccat 5267160  T
Q  220 cttcagacgttgactaaatttgctgtggtaaaggagcatgggtatgatattaaggaattgacagaactcaaccagcttcaagggaaactttgtatttcag 319  Q
    ||||||||| |||||||||||| |||||||||||||||||||| || ||||||||| ||| | ||||| |||||||||||||||||||||||||||||||    
T  5267159 cttcagacgctgactaaatttgttgtggtaaaggagcatgggtctggtattaaggagttggcggaacttaaccagcttcaagggaaactttgtatttcag 5267060  T
Q  320 ggttagaaaatgtcatta 337  Q
    |||| |||||||||||||    
T  5267059 ggttggaaaatgtcatta 5267042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 111 - 334
Target Start/End: Complemental strand, 5262996 - 5262773
Alignment:
Q  111 attgactgagctcccttcagatttttacaaacttagcaatttacgtcatcttgatctggaaagaactcacataaagatgatgccaaaagatatagggagg 210  Q
    |||||| |||||||||||||||||||| |||||   ||||||||| |||||| |||| ||||| ||||  ||   || |||||||||  | |||   |||    
T  5262996 attgacggagctcccttcagatttttataaactcgtcaatttacgccatcttaatctagaaagcactcttatctcgaagatgccaaagcaaatacaaagg 5262897  T
Q  211 ctaacccatcttcagacgttgactaaatttgctgtggtaaaggagcatgggtatgatattaaggaattgacagaactcaaccagcttcaagggaaacttt 310  Q
    |||| |||||||||||| ||||| || |||| ||||| | || |   ||||||||||||||||||||||  | |||||||||| |||| ||  | |||||    
T  5262896 ctaagccatcttcagactttgacaaattttgttgtgggagagcatagtgggtatgatattaaggaattggaaaaactcaaccatcttcgagaaacacttt 5262797  T
Q  311 gtatttcagggttagaaaatgtca 334  Q
    ||||||||  ||| ||||||||||    
T  5262796 gtatttcacagttggaaaatgtca 5262773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 111 - 334
Target Start/End: Complemental strand, 5279872 - 5279649
Alignment:
Q  111 attgactgagctcccttcagatttttacaaacttagcaatttacgtcatcttgatctggaaagaactcacataaagatgatgccaaaagatatagggagg 210  Q
    ||||||||||||||||||| ||||||||||||||  |||||||||||||||| |||| ||||| ||||  ||    | ||||||| |  | |||   |||    
T  5279872 attgactgagctcccttcaaatttttacaaacttgtcaatttacgtcatcttaatctagaaagcactcttatctcaaagatgccagagcaaatacaaagg 5279773  T
Q  211 ctaacccatcttcagacgttgactaaatttgctgtggtaaaggagcatgggtatgatattaaggaattgacagaactcaaccagcttcaagggaaacttt 310  Q
    |||||||||||| |||||||||| || |||| ||||| | || |   ||||| | |||||||||| |||  | |||||||||| |||| ||| | |||||    
T  5279772 ctaacccatcttgagacgttgacaaattttgttgtgggagagcatagtgggtctaatattaaggagttggaaaaactcaaccatcttcgaggaacacttt 5279673  T
Q  311 gtatttcagggttagaaaatgtca 334  Q
    ||||||||  ||| ||||||||||    
T  5279672 gtatttcacagttggaaaatgtca 5279649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 337
Target Start/End: Original strand, 6839663 - 6839956
Alignment:
Q  47 aaagtttgcctgattccatttgtaacctatataatttacaaacactgctattgaaaaattgtcc---attgactgagctcccttcagatttttacaaact 143  Q
    |||| ||||| ||||| ||||||||||| ||||||||| | |||||  ||||| | || |||     ||||||||| ||||||||| |||||||||||||    
T  6839663 aaaggttgccagattctatttgtaacctttataatttagagacactaatattggagaagtgttatgaattgactgaactcccttcaaatttttacaaact 6839762  T
Q  144 tagcaatttacgtcatcttgatctggaaagaactcacataaagatgatgccaaaagatatagggaggctaacccatcttcagacgttgactaaatttgct 243  Q
       || |||||| |||||| |||| ||| |   | | ||||||| |||||||||  | ||||||||||||| ||||||||| ||  ||| | | |||| |    
T  6839763 agtcagtttacgccatcttaatcttgaaggctgtaatataaagaagatgccaaagaagatagggaggctaaaccatcttcaaacactgagtcattttgtt 6839862  T
Q  244 gtggtaaaggagcatgggtatgatattaaggaattgacagaactcaaccagcttcaagggaaactttgtatttcagggttagaaaatgtcatta 337  Q
    |||| | |  ||  ||||| |||||||| ||| |||    | ||||| || |||||||||||||||||||||||||| || ||| |||||||||    
T  6839863 gtgggagaacagagtgggtctgatattacggagttgggtaatctcaatcatcttcaagggaaactttgtatttcaggattggaacatgtcatta 6839956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 47 - 167
Target Start/End: Original strand, 8569713 - 8569836
Alignment:
Q  47 aaagtttgcctgattccatttgtaacctatataatttacaaacactgctattgaaaaattgtcc---attgactgagctcccttcagatttttacaaact 143  Q
    |||| ||||||||||||||||||||  | |||||||||||||||||  ||||| || | ||| |   ||||||  ||||||||||| |||||||||||||    
T  8569713 aaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagaatgttctgaattgaccaagctcccttcatatttttacaaact 8569812  T
Q  144 tagcaatttacgtcatcttgatct 167  Q
    |  ||||||||| |||||| ||||    
T  8569813 tgccaatttacgccatcttaatct 8569836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 336
Target Start/End: Complemental strand, 5297950 - 5297718
Alignment:
Q  104 attgtccattgactgagctcccttcagatttttacaaacttagcaatttacgtcatcttgatctggaaagaactcacataaagatgatgccaaaagatat 203  Q
    |||||||| |||||||| | |||| |||||||||||||||   || |||||| ||||||   ||  || | ||||| ||||||| ||||||| |  ||||    
T  5297950 attgtccactgactgagtttcctttagatttttacaaactcgtcagtttacgccatcttatcctaaaaggcactcatataaagaagatgccagagcatat 5297851  T
Q  204 agggaggctaacccatcttcagacgttgactaaatttgctgtggtaaaggagcatgggtatgatattaaggaattgacagaactcaaccagcttcaaggg 303  Q
    ||| ||  ||  ||||||||| ||| ||||| | |||| ||||| | |  |  | |||| ||||||||| || ||| || |||||||||| ||||||||     
T  5297850 aggaagattacaccatcttcaaacgctgactgattttgttgtgggagaccaaaaagggtctgatattaatgagttggcaaaactcaaccatcttcaaggt 5297751  T
Q  304 aaactttgtatttcagggttagaaaatgtcatt 336  Q
    | |||| ||||||||||||| ||||||||||||    
T  5297750 acacttcgtatttcagggttggaaaatgtcatt 5297718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 6480802 - 6480855
Alignment:
Q  111 attgactgagctcccttcagatttttacaaacttagcaatttacgtcatcttga 164  Q
    ||||||||||||||||||| |||||| |||||| | ||||||||||||||||||    
T  6480802 attgactgagctcccttcaaatttttccaaactcatcaatttacgtcatcttga 6480855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 6520982 - 6521035
Alignment:
Q  111 attgactgagctcccttcagatttttacaaacttagcaatttacgtcatcttga 164  Q
    ||||||||||||||||||| |||||| |||||| | ||||||||||||||||||    
T  6520982 attgactgagctcccttcaaatttttccaaactcatcaatttacgtcatcttga 6521035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 6527722 - 6527775
Alignment:
Q  111 attgactgagctcccttcagatttttacaaacttagcaatttacgtcatcttga 164  Q
    ||||||||||||||||||| |||||| |||||| | ||||||||||||||||||    
T  6527722 attgactgagctcccttcaaatttttccaaactcatcaatttacgtcatcttga 6527775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 6555288 - 6555341
Alignment:
Q  111 attgactgagctcccttcagatttttacaaacttagcaatttacgtcatcttga 164  Q
    ||||||||||||||||||| |||||| |||||| | ||||||||||||||||||    
T  6555288 attgactgagctcccttcaaatttttccaaactcatcaatttacgtcatcttga 6555341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 6899305 - 6899222
Alignment:
Q  113 tgactgagctcccttcagatttttacaaacttagcaatttacgtcatcttgatctggaaagaactcacataaagatgatgccaa 196  Q
    |||||||||||||||||||||||| ||||||   |||| ||||||||||| ||||| || | ||||| |||| || ||||||||    
T  6899305 tgactgagctcccttcagatttttgcaaactcgtcaatctacgtcatcttaatctgcaaggcactcatataatgaagatgccaa 6899222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 6237972 - 6237886
Alignment:
Q  111 attgactgagctcccttcagatttttacaaacttagcaatttacgtcatcttgatctggaaagaactcacataaagatgatgccaaa 197  Q
    ||||||| ||||||| ||| |||||| |||||||| |||||||||||||||| || || || |||| || || |||| |||||||||    
T  6237972 attgactaagctcccatcaaatttttgcaaacttatcaatttacgtcatcttaatttgaaaggaacgcatattaagaagatgccaaa 6237886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 335
Target Start/End: Complemental strand, 7587005 - 7586851
Alignment:
Q  181 ataaagatgatgccaaaagatatagggaggctaacccatcttcagacgttgactaaatttgctgtggtaaaggagcatgggtatgatattaaggaattga 280  Q
    ||||||| |||||||||  | ||||||||||||| ||||||||| ||| ||| | | |||| ||||| | |  ||  ||||| |||||||||||| |||     
T  7587005 ataaagaagatgccaaagaagatagggaggctaaaccatcttcaaacgctgagtgattttgttgtgggagaacagagtgggtctgatattaaggagttgg 7586906  T
Q  281 cagaactcaaccagcttcaagggaaactttgtatttcagggttagaaaatgtcat 335  Q
       | ||||| || ||||||||| ||||||||||||||||| | ||| |||||||    
T  7586905 gtaatctcaatcatcttcaaggggaactttgtatttcagggatggaacatgtcat 7586851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 343
Target Start/End: Complemental strand, 8470679 - 8470538
Alignment:
Q  202 atagggaggctaacccatcttcagacgttgactaaatttgctgtggtaaaggagcatgggtatgatattaaggaattgacagaactcaaccagcttcaag 301  Q
    |||||||| |||| ||||||||| ||| ||| | | |||| ||||| | ||||| |||||| | ||||| |||| |||    | ||||| |  |||| ||    
T  8470679 atagggagtctaatccatcttcaaacgctgagtcattttgttgtggaagaggagaatgggtctaatattcaggagttgggtaagctcaatcgtcttcgag 8470580  T
Q  302 ggaaactttgtatttcagggttagaaaatgtcattattcccg 343  Q
    |||||||||||||||||||||| ||| ||||||||| |||||    
T  8470579 ggaaactttgtatttcagggttggaacatgtcattaatcccg 8470538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 7749221 - 7749165
Alignment:
Q  111 attgactgagctcccttcagatttttacaaacttagcaatttacgtcatcttgatct 167  Q
    |||| ||||||| ||||||||||||| |||||| | |||||||||||||||| ||||    
T  7749221 attggctgagctgccttcagatttttgcaaactcatcaatttacgtcatcttaatct 7749165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 196
Target Start/End: Original strand, 6592163 - 6592248
Alignment:
Q  111 attgactgagctcccttcagatttttacaaacttagcaatttacgtcatcttgatctggaaagaactcacataaagatgatgccaa 196  Q
    |||||| || ||||||||||||||| ||||||| | |||||| || |||||| ||||| || | ||||| || |||| ||||||||    
T  6592163 attgaccgaactcccttcagattttcacaaactcatcaatttgcgccatcttaatctgaaaggcactcatattaagaagatgccaa 6592248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 6735169 - 6735116
Alignment:
Q  111 attgactgagctcccttcagatttttacaaacttagcaatttacgtcatcttga 164  Q
    ||||||||||||||||||| |||||| ||||||   ||||||| ||||||||||    
T  6735169 attgactgagctcccttcaaatttttccaaactcgtcaatttatgtcatcttga 6735116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 275
Target Start/End: Original strand, 6574145 - 6574309
Alignment:
Q  111 attgactgagctcccttcagatttttacaaacttagcaatttacgtcatcttgatctggaaagaactcacataaagatgatgccaaaagatatagggagg 210  Q
    |||||| || |||||||||||||||||||||||   || ||||||||||||| || || | || ||| | || |||| |||||||||  | ||||||| |    
T  6574145 attgaccgaactcccttcagatttttacaaactcgacagtttacgtcatcttaatatgaatagcactgatattaagaagatgccaaagaagatagggaag 6574244  T
Q  211 ctaacccatcttcagacgttgactaaatttgctgtggtaaaggagcatgggtatgatattaagga 275  Q
    |||| ||||||||||||  ||||||| ||||  |||| | || || |||||| ||||||||||||    
T  6574245 ctaaaccatcttcagacactgactaattttgtagtgggagagaagaatgggtctgatattaagga 6574309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 8327 - 8380
Alignment:
Q  111 attgactgagctcccttcagatttttacaaacttagcaatttacgtcatcttga 164  Q
    ||||||||||||||||||| |||||| |||||| | ||||||||||||||||||    
T  8327 attgactgagctcccttcaaatttttccaaactcatcaatttacgtcatcttga 8380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 335
Target Start/End: Complemental strand, 1301 - 1147
Alignment:
Q  181 ataaagatgatgccaaaagatatagggaggctaacccatcttcagacgttgactaaatttgctgtggtaaaggagcatgggtatgatattaaggaattga 280  Q
    |||||||  ||||||||  | |||||||| |||| ||||||||| ||  ||| |||||||| ||||| | ||||| |||||| | ||||| |||| |||     
T  1301 ataaagaaaatgccaaagcagatagggagtctaaaccatcttcaaacactgagtaaatttgttgtgggagaggagaatgggtctaatattcaggagttgg 1202  T
Q  281 cagaactcaaccagcttcaagggaaactttgtatttcagggttagaaaatgtcat 335  Q
       | ||||| |  |||||||||||||||||||||||||| || ||| |||||||    
T  1201 gtaatctcaatcgtcttcaagggaaactttgtatttcaggattggaacatgtcat 1147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University