View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11567_high_24 (Length: 229)

Name: NF11567_high_24
Description: NF11567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11567_high_24
NF11567_high_24
[»] chr7 (11 HSPs)
chr7 (25-133)||(1866080-1866188)
chr7 (1-170)||(1841604-1841769)
chr7 (3-94)||(1828975-1829065)
chr7 (30-94)||(1811526-1811590)
chr7 (26-89)||(1840304-1840367)
chr7 (26-89)||(1821889-1821952)
chr7 (18-88)||(15584258-15584328)
chr7 (32-87)||(1881685-1881740)
chr7 (27-103)||(1905093-1905169)
chr7 (48-87)||(1872161-1872200)
chr7 (25-56)||(17982606-17982637)
[»] chr4 (4 HSPs)
chr4 (24-87)||(15479544-15479607)
chr4 (25-132)||(15428690-15428797)
chr4 (25-132)||(15435308-15435415)
chr4 (24-87)||(15465257-15465320)


Alignment Details
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 1866080 - 1866188
Alignment:
Q  25 aaaatacaattatttgatgcatgcacaaaaaccaaatgacagctcctcaaatattctagcataaagtatagtctacaatacatttgctcgagcaggaacc 124  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||| ||||||| || |||||||||| ||| ||||   |||||| |||||| |||     
T  1866080 aaaatacaattattcggtgcatgcacaaaaaccaaatgacagctcctcgaatattccagtataaagtataatctgcaattattttgctagagcagaaact 1866179  T
Q  125 cattcatct 133  Q
    |||||||||    
T  1866180 cattcatct 1866188  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 1841769 - 1841604
Alignment:
Q  1 caaggtccataaaatttggaaaagaaaatacaattatttgatgcatgcacaaaaaccaaatgacagctcctcaaatattctagcataaagtatagtctac 100  Q
    |||||||||| ||||||| |||| ||  |||||||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||||  | |   | |    
T  1841769 caaggtccatgaaatttgaaaaacaa--tacaattatttggtgcatgcacaaaaactaaatgacaactcctcaaatattctggcataaa--agaaattgc 1841674  T
Q  101 aatacatttgctcgagcaggaacccattcatctcagtgtgctatattggcagttggctttacgacaccta 170  Q
    ||| | ||| || |||||||||| ||||||||||||| ||||   |||||||| | ||||||||||||||    
T  1841673 aattctttttctagagcaggaactcattcatctcagtttgctcgcttggcagtagcctttacgacaccta 1841604  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 1828975 - 1829065
Alignment:
Q  3 aggtccataaaatttggaaaagaaaatacaattatttgatgcatgcacaaaaaccaaatgacagctcctcaaatattctagcataaagtata 94  Q
    |||||||| ||||||| |||||||| |||||||||||| |||||||||||||||  |||| ||||||||| ||||||||||||||| |||||    
T  1828975 aggtccattaaatttgaaaaagaaa-tacaattatttggtgcatgcacaaaaacttaatggcagctcctctaatattctagcataatgtata 1829065  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 1811526 - 1811590
Alignment:
Q  30 acaattatttgatgcatgcacaaaaaccaaatgacagctcctcaaatattctagcataaagtata 94  Q
    |||||| ||| |||| ||||||||||||||||||||||| || ||||||||||||||||||||||    
T  1811526 acaattttttaatgcgtgcacaaaaaccaaatgacagcttctaaaatattctagcataaagtata 1811590  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 1840367 - 1840304
Alignment:
Q  26 aaatacaattatttgatgcatgcacaaaaaccaaatgacagctcctcaaatattctagcataaa 89  Q
    ||||||||||||||| | || |||||||||| |||||||| |||||||||||||||||||||||    
T  1840367 aaatacaattatttggttcacgcacaaaaactaaatgacaactcctcaaatattctagcataaa 1840304  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 1821952 - 1821889
Alignment:
Q  26 aaatacaattatttgatgcatgcacaaaaaccaaatgacagctcctcaaatattctagcataaa 89  Q
    ||||||||||||||| |||||||||||||||  | ||||| |||||| ||||||||||||||||    
T  1821952 aaatacaattatttgttgcatgcacaaaaacttattgacaactcctcgaatattctagcataaa 1821889  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 15584328 - 15584258
Alignment:
Q  18 ggaaaagaaaatacaattatttgatgcatgcacaaaaaccaaatgacagctcctcaaatattctagcataa 88  Q
    ||||||||||||||||||||| ||| || |||||||||| |||||||| ||| | |||||||||| |||||    
T  15584328 ggaaaagaaaatacaattattcgatacaagcacaaaaactaaatgacatctcatgaaatattctatcataa 15584258  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 1881685 - 1881740
Alignment:
Q  32 aattatttgatgcatgcacaaaaaccaaatgacagctcctcaaatattctagcata 87  Q
    ||||||| | ||||| |||||| ||||||||| |||||||||||||||||||||||    
T  1881685 aattattaggtgcatacacaaataccaaatgaaagctcctcaaatattctagcata 1881740  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 1905169 - 1905093
Alignment:
Q  27 aatacaattatttgatgcatgcacaaaaaccaaatgacagctcctcaaatattctagcataaagtatagtctacaat 103  Q
    |||||||||||||| |||||||| |||||| |||||| | |||| | | |||||||||||| |||||| | ||||||    
T  1905169 aatacaattatttggtgcatgcataaaaactaaatgagaactccgcgagtattctagcatagagtatattgtacaat 1905093  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 1872161 - 1872200
Alignment:
Q  48 cacaaaaaccaaatgacagctcctcaaatattctagcata 87  Q
    |||||| ||||||||| |||||||||||||||||||||||    
T  1872161 cacaaataccaaatgaaagctcctcaaatattctagcata 1872200  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 17982606 - 17982637
Alignment:
Q  25 aaaatacaattatttgatgcatgcacaaaaac 56  Q
    ||||||||||||||||||||||||||||||||    
T  17982606 aaaatacaattatttgatgcatgcacaaaaac 17982637  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 15479544 - 15479607
Alignment:
Q  24 gaaaatacaattatttgatgcatgcacaaaaaccaaatgacagctcctcaaatattctagcata 87  Q
    ||||||||||||||||||||||| || | | |||||||||||||||||  ||||||||| ||||    
T  15479544 gaaaatacaattatttgatgcatacatatataccaaatgacagctccttgaatattctaacata 15479607  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 15428690 - 15428797
Alignment:
Q  25 aaaatacaattatttgatgcatgcacaaaaaccaaatgacagctcctcaaatattctagcataaagtatagtctacaatacatttgctcgagcaggaacc 124  Q
    |||||||||||||||| ||||| || ||| || ||||||||||||||  ||||||||| |||| | |||| | |||||| | |||| | ||||| ||||     
T  15428690 aaaatacaattatttggtgcatacataaatacaaaatgacagctccttgaatattctaacatagaatatattgtacaattcttttgtttgagcaagaact 15428789  T
Q  125 cattcatc 132  Q
    | ||||||    
T  15428790 cgttcatc 15428797  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 15435308 - 15435415
Alignment:
Q  25 aaaatacaattatttgatgcatgcacaaaaaccaaatgacagctcctcaaatattctagcataaagtatagtctacaatacatttgctcgagcaggaacc 124  Q
    |||||||||||||||| ||||| || ||| || ||||||||||||||  ||||||||| |||| | |||| | |||||| | |||| | ||||| ||||     
T  15435308 aaaatacaattatttggtgcatacataaatacaaaatgacagctccttgaatattctaacatagaatatattgtacaattcttttgtttgagcaagaact 15435407  T
Q  125 cattcatc 132  Q
    | ||||||    
T  15435408 cgttcatc 15435415  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 15465257 - 15465320
Alignment:
Q  24 gaaaatacaattatttgatgcatgcacaaaaaccaaatgacagctcctcaaatattctagcata 87  Q
    ||||||||||||||||| ||||| ||  || |||||||||||||||||  ||||||||| ||||    
T  15465257 gaaaatacaattatttggtgcatacatgaataccaaatgacagctccttgaatattctaacata 15465320  T

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