View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11567_high_3 (Length: 556)

Name: NF11567_high_3
Description: NF11567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11567_high_3
NF11567_high_3
[»] chr2 (5 HSPs)
chr2 (11-292)||(43411205-43411490)
chr2 (356-541)||(43410960-43411141)
chr2 (21-93)||(29682595-29682667)
chr2 (378-473)||(43398032-43398126)
chr2 (234-291)||(43398166-43398223)
[»] chr4 (4 HSPs)
chr4 (21-95)||(50655203-50655277)
chr4 (21-95)||(12843059-12843133)
chr4 (11-67)||(30251516-30251572)
chr4 (16-95)||(45068248-45068327)
[»] chr7 (2 HSPs)
chr7 (19-67)||(46028566-46028614)
chr7 (28-95)||(23177036-23177103)
[»] chr6 (4 HSPs)
chr6 (21-61)||(51920-51960)
chr6 (16-67)||(19290217-19290268)
chr6 (25-67)||(12834043-12834085)
chr6 (21-62)||(9557497-9557538)
[»] chr1 (3 HSPs)
chr1 (11-67)||(9644291-9644347)
chr1 (21-67)||(52372580-52372626)
chr1 (21-93)||(51871097-51871169)
[»] chr3 (1 HSPs)
chr3 (25-79)||(1762124-1762178)
[»] chr5 (3 HSPs)
chr5 (34-95)||(16154582-16154643)
chr5 (21-58)||(39774300-39774337)
chr5 (32-92)||(41650420-41650480)
[»] chr8 (2 HSPs)
chr8 (22-67)||(7656930-7656975)
chr8 (25-74)||(41926933-41926982)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 292
Target Start/End: Complemental strand, 43411490 - 43411205
Alignment:
Q  11 cagagaacacaaggtcattccgggacgtccagatggtccaaataacagcatgtcaaatcagaagtaaacctagcataactctcttattatcaaaatatta 110  Q
    |||| ||||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43411490 cagaaaacacaaggtcattctgggacgtccagatggtccaaataatagcacgtcaaaccagaagtaaacctagcataactctcttattatcaaaatatta 43411391  T
Q  111 aaagataataatatttctgaaccaattggttcaaacacggaaattaaatcttgttacttcgt----nnnnnnnnnttccttgttatagcaacagaaggaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||             ||||||||||||||||||||||||     
T  43411390 aaagataataatatttctgaaccaattggttcaaacacggaaattaaatcttgttacttggtaaaaaaaaaaaaattccttgttatagcaacagaaggat 43411291  T
Q  207 attataagattaagcgtcgtaagcatgcttttactttagggtccctcttgaagataaattctttgtctcatgcgatgcccaataac 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43411290 attataagattaagcgtcgtaagcatgcttttactttagggtccctcttgaagataaattctttgtctcatgcgatgcccaataac 43411205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 356 - 541
Target Start/End: Complemental strand, 43411141 - 43410960
Alignment:
Q  356 caatcaagtaaattgagttgaaagttgagactagatagcgcaaggcatatgctaattttggtatatgtctgtctccttttgttattcattttattttata 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43411141 caatcaagtaaattgagttgaaagttgagactagatagcgcaaggcatatgctaattttggtatatgtctgtctccttttgttattcattttattttata 43411042  T
Q  456 aaaaagggaaagaatttcattcctaattattctttttatgcatccgtatagcagagatggaatatatatgttaatgcatcttcatc 541  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||    
T  43411041 aaaaagggaaagaatttcattcctaattattctttttatgcatccgtatagcagagatgga----atatgttaatgcatcttcatc 43410960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 29682667 - 29682595
Alignment:
Q  21 aaggtcattccgggacgtccagatggtccaaataacagcatgtcaaatcagaagtaaacctagcataactctc 93  Q
    ||||||||||||||||| ||| ||||||||||||||| |||| ||||  ||||| ||||||| | ||||||||    
T  29682667 aaggtcattccgggacgcccaaatggtccaaataacaacatgccaaacaagaagcaaacctaacctaactctc 29682595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 473
Target Start/End: Complemental strand, 43398126 - 43398032
Alignment:
Q  378 agttgagactagatagcgcaaggcatatgctaattttggtatatgtctgtctcctttt-gttattcattttattttataaaaaagggaaagaatttc 473  Q
    ||||||||||||| |||||| |||||||||||  |||||| ||||| |||||||||||  ||||||||||||   |||||||||||||| |||||||    
T  43398126 agttgagactagagagcgcagggcatatgctatatttggt-tatgtttgtctccttttatttattcatttta-catataaaaaagggaatgaatttc 43398032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 43398223 - 43398166
Alignment:
Q  234 cttttactttagggtccctcttgaagataaattctttgtctcatgcgatgcccaataa 291  Q
    |||||| ||| | |||||| |||| ||||||||| |||||||||| ||||||||||||    
T  43398223 cttttagttttgagtcccttttgaggataaattcattgtctcatgagatgcccaataa 43398166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 50655203 - 50655277
Alignment:
Q  21 aaggtcattccgggacgtccagatggtccaaataacagcatgtcaaatcagaagtaaacctagcataactctctt 95  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| ||| || ||||||| | ||||||||||    
T  50655203 aaggtcattacgggacgtccagatggtccaaataacagcatgccaaaccaggagcaaacctaacctaactctctt 50655277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 12843059 - 12843133
Alignment:
Q  21 aaggtcattccgggacgtccagatggtccaaataacagcatgtcaaatcagaagtaaacctagcataactctctt 95  Q
    ||||||||||||||| ||||| |||||||| ||||||  ||| |||| |||||| ||||||| | ||||||||||    
T  12843059 aaggtcattccgggaagtccaaatggtccagataacaaaatgccaaaccagaagcaaacctatcctaactctctt 12843133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 30251516 - 30251572
Alignment:
Q  11 cagagaacacaaggtcattccgggacgtccagatggtccaaataacagcatgtcaaa 67  Q
    ||||||| | |||||| || | ||||||||| |||||||||||||||||||||||||    
T  30251516 cagagaaaataaggtcgtttcaggacgtccaaatggtccaaataacagcatgtcaaa 30251572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 45068248 - 45068327
Alignment:
Q  16 aacacaaggtcattccgggacgtccagatggtccaaataacagcatgtcaaatcagaagtaaacctagcataactctctt 95  Q
    |||| |||||| ||| |||||||||||||| ||||||||| | |||||||||  ||||| ||||||| | | ||||||||    
T  45068248 aacaaaaggtcgttcagggacgtccagatgttccaaataaaaacatgtcaaacaagaagcaaacctaacctcactctctt 45068327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 46028566 - 46028614
Alignment:
Q  19 acaaggtcattccgggacgtccagatggtccaaataacagcatgtcaaa 67  Q
    ||||||||||||||||| || ||||||||||||||||||||||| ||||    
T  46028566 acaaggtcattccgggaagttcagatggtccaaataacagcatgccaaa 46028614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 23177036 - 23177103
Alignment:
Q  28 ttccgggacgtccagatggtccaaataacagcatgtcaaatcagaagtaaacctagcataactctctt 95  Q
    ||||| |||||||||||||||||||||||| ||||||||| |||||| | |||||   ||||||||||    
T  23177036 ttccgagacgtccagatggtccaaataacaacatgtcaaaccagaagaagacctaatctaactctctt 23177103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 51960 - 51920
Alignment:
Q  21 aaggtcattccgggacgtccagatggtccaaataacagcat 61  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  51960 aaggtcattacgggacgtccagatggtccaaataacagcat 51920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 19290268 - 19290217
Alignment:
Q  16 aacacaaggtcattccgggacgtccagatggtccaaataacagcatgtcaaa 67  Q
    |||| ||||||||||||||| |||||||| || |||||||||||||||||||    
T  19290268 aacataaggtcattccgggatgtccagattgttcaaataacagcatgtcaaa 19290217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 12834043 - 12834085
Alignment:
Q  25 tcattccgggacgtccagatggtccaaataacagcatgtcaaa 67  Q
    ||||||||| || ||||||||||||||||||||||||| ||||    
T  12834043 tcattccggaacatccagatggtccaaataacagcatgccaaa 12834085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 9557497 - 9557538
Alignment:
Q  21 aaggtcattccgggacgtccagatggtccaaataacagcatg 62  Q
    ||||||||| ||||||||| ||||||||||||||||| ||||    
T  9557497 aaggtcatttcgggacgtcaagatggtccaaataacaacatg 9557538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 9644347 - 9644291
Alignment:
Q  11 cagagaacacaaggtcattccgggacgtccagatggtccaaataacagcatgtcaaa 67  Q
    ||||||| | |||||| ||||||||| |||||||||||||||||||| |||||||||    
T  9644347 cagagaagataaggtcgttccgggacatccagatggtccaaataacaacatgtcaaa 9644291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 52372626 - 52372580
Alignment:
Q  21 aaggtcattccgggacgtccagatggtccaaataacagcatgtcaaa 67  Q
    ||||||||||||||| ||||||||||||||||||| |||||| ||||    
T  52372626 aaggtcattccgggaggtccagatggtccaaataatagcatgccaaa 52372580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 51871169 - 51871097
Alignment:
Q  21 aaggtcattccgggacgtccagatggtccaaataacagcatgtcaaatcagaagtaaacctagcataactctc 93  Q
    ||||||||| |||| |||||| |||||||| ||||||||||| ||||  ||||| ||||||| | ||||||||    
T  51871169 aaggtcatttcgggtcgtccaaatggtccagataacagcatgccaaacaagaagcaaacctaacctaactctc 51871097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 1762124 - 1762178
Alignment:
Q  25 tcattccgggacgtccagatggtccaaataacagcatgtcaaatcagaagtaaac 79  Q
    ||||||| ||||||||||||||||||||||||| |||| ||||  ||||||||||    
T  1762124 tcattccaggacgtccagatggtccaaataacaacatgccaaacaagaagtaaac 1762178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 16154582 - 16154643
Alignment:
Q  34 gacgtccagatggtccaaataacagcatgtcaaatcagaagtaaacctagcataactctctt 95  Q
    |||||||| ||||||||||||| |||||| ||||| ||||| ||||||| | ||||||||||    
T  16154582 gacgtccaaatggtccaaataatagcatgccaaataagaagcaaacctaacctaactctctt 16154643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 39774337 - 39774300
Alignment:
Q  21 aaggtcattccgggacgtccagatggtccaaataacag 58  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  39774337 aaggtcgttccgggacgtccagatgatccaaataacag 39774300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 41650480 - 41650420
Alignment:
Q  32 gggacgtccagatggtccaaataacagcatgtcaaatcagaagtaaacctagcataactct 92  Q
    |||||||||| ||||||||||| |||||||| |||| |||||| | ||||| | |||||||    
T  41650480 gggacgtccaaatggtccaaatgacagcatgccaaaccagaagcagacctaacctaactct 41650420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 7656930 - 7656975
Alignment:
Q  22 aggtcattccgggacgtccagatggtccaaataacagcatgtcaaa 67  Q
    |||||||||||||||||  |||||||| |||| |||||||||||||    
T  7656930 aggtcattccgggacgtttagatggtctaaatgacagcatgtcaaa 7656975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 41926982 - 41926933
Alignment:
Q  25 tcattccgggacgtccagatggtccaaataacagcatgtcaaatcagaag 74  Q
    |||||||| || ||||| |||||||||||||||||||| |||| ||||||    
T  41926982 tcattccgagaagtccaaatggtccaaataacagcatgccaaaccagaag 41926933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University