View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11567_high_4 (Length: 501)
Name: NF11567_high_4
Description: NF11567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11567_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 92 - 481
Target Start/End: Complemental strand, 42524816 - 42524428
Alignment:
| Q |
92 |
gatggggaagagattaatggagttcatgatgaggaagatatgatgaagaggatggtgtactataactattataatcagccactctatgttgttgaacgaa |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42524816 |
gatggggaagagattaatggagttcatgatgaggaagatatgatgaagaggatgatgtactataactattataatcagccactctatgttgttgaacgaa |
42524717 |
T |
|
| Q |
192 |
tgccaccaccacctcaactctttagtgatgaaaatcccaatgcatgttgcatttcataaaattcatcacattcacatcatatcaaactagttatttgatg |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42524716 |
tgccaccaccacctcaactctttagtgatgaaaatcccaatgcatgttgcatttcataaaattcatcacattcacatcatatcaaactagttatttgatg |
42524617 |
T |
|
| Q |
292 |
atatatcgttcagcctttttatgcatgtacgatatattactacatattaaaatattctattgtatacatacaaatgtgtatcctcaaccnnnnnnnnctt |
391 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| |
|
|
| T |
42524616 |
atatatcgttcagcctttttatgtatgtacgatatattactacatattaaaatattctattgtatacatagaaatgtgtatcctcaa-cgtttttttctt |
42524518 |
T |
|
| Q |
392 |
tctatttagtttggacttggttaatggatgaatttgatgttcaaatttcgaacataatttttacggttgtagactatacatagtctacag |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42524517 |
tctatttagtttggacttggttaatggatgaatttgatgttcaaatttcgaacataatttttacggtagtagactatacatagtctacag |
42524428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 42524907 - 42524875
Alignment:
| Q |
1 |
aggagagaaaccagcagaagaagaggttaaacc |
33 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
42524907 |
aggagagaaaccagcagaagaagaggctaaacc |
42524875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 165 - 296
Target Start/End: Original strand, 40169895 - 40170026
Alignment:
| Q |
165 |
atcagccactctatgttgttgaacgaatgccaccaccacctcaactctttagtgatgaaaatcccaatgcatgttgcatttcataaaattcatcacattc |
264 |
Q |
| |
|
|||||| | ||||||| | |||| |||| |||| ||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
40169895 |
atcagctagtctatgtggatgaaggaatcccacaaccacctcaactctttagtgatgaaaaccccaatgcacattgtatttcataaaattcatcacattc |
40169994 |
T |
|
| Q |
265 |
acatcatatcaaactagttatttgatgatata |
296 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| |
|
|
| T |
40169995 |
acatgatatcaaactaggtatttgatgatata |
40170026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 310
Target Start/End: Original strand, 40170026 - 40170129
Alignment:
| Q |
207 |
aactctttagtgatgaaaatcccaatgcatgttgcatttcataaaattcatcacattcacatcatatcaaactagttatttgatgatatatcgttcagcc |
306 |
Q |
| |
|
||||||||||||||||||| ||||||| | || ||||||||||||||||||||||||||| ||||||||| || |||||||||||||| | ||||||| |
|
|
| T |
40170026 |
aactctttagtgatgaaaaccccaatgaacaatgtatttcataaaattcatcacattcacatgatatcaaaccaggtatttgatgatataacattcagcc |
40170125 |
T |
|
| Q |
307 |
tttt |
310 |
Q |
| |
|
|||| |
|
|
| T |
40170126 |
tttt |
40170129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 29282999 - 29283053
Alignment:
| Q |
197 |
ccaccacctcaactctttagtgatgaaaatcccaatgcatgttgcatttcataaa |
251 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
29282999 |
ccaccacctcaactattcagtgatgaaaatcctaatgcatgcatcatttcataaa |
29283053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 6469888 - 6469834
Alignment:
| Q |
197 |
ccaccacctcaactctttagtgatgaaaatcccaatgcatgttgcatttcataaa |
251 |
Q |
| |
|
||||| |||||||| || |||||||||||||| |||||||| |||||||||||| |
|
|
| T |
6469888 |
ccacctcctcaactattcagtgatgaaaatcctaatgcatgcagcatttcataaa |
6469834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University