View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11567_high_6 (Length: 407)
Name: NF11567_high_6
Description: NF11567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11567_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 30 - 396
Target Start/End: Complemental strand, 34563425 - 34563051
Alignment:
| Q |
30 |
ttgggtgaggggtcacttcagtttacattatttaccttcataaatgaatgtgtcaattggtttgcaaagaccatcgtccgaaactcaaattcatgttaat |
129 |
Q |
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| T |
34563425 |
ttgggtgaggggtcacttcagtttacattatttaccttcataaataaatgtgtcaattgatttgcaaagaccatcgtccgaaactcaatttcatgttaat |
34563326 |
T |
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| Q |
130 |
gcttaatgttgtaagcgttgcttgaccg-gaacttagtttcttt------------gtttttgtttatttttccattgcatnnnnnnnnnnnnnttatta |
216 |
Q |
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| T |
34563325 |
gcttaatgttataagcgttgctcgtccgcgaacttagtttctttttatgtttctttgtttttgtttatttttccattgcataaaagaaaag-----atta |
34563231 |
T |
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| Q |
217 |
aattgatatagcgcaacaaattaataaatttgaggatttactcatttttgtttataagtgcaatttatagttcaataaatggcgtaaacttcattatcaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||| |
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| T |
34563230 |
aattgatatagcgcaacaaattaataaatttgaggatttactcatttttgtttataagtgcaatttatggttcaataaatgacgtaaacttcactatcaa |
34563131 |
T |
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| Q |
317 |
ctcaaagtttgtttacctgtcatcaaacttaaacagacaaattcagcgctcttcccgctacgcagttcactctcattcat |
396 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34563130 |
ctcaaagtttgtttaactgtcatcaaacttaaacagacaaattcagcgctcttcccgctacgcagttcactctcattcat |
34563051 |
T |
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