View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11567_low_17 (Length: 253)
Name: NF11567_low_17
Description: NF11567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11567_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 19625402 - 19625676
Alignment:
| Q |
1 |
aaccatggcagatatttgccttattgtaataatacacgat---------------agcctaactaaaaatatgcattaataatgaggactcataattaag |
85 |
Q |
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| T |
19625402 |
aaccatggcagatatttgccttattgtaataatacacgatcttacaaaagtcccaagcctaactaaaaatatgcattaataatgaggactcaaaattaag |
19625501 |
T |
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| Q |
86 |
ggacttatttagctacttatataaaagcacttttcagggaagtgctta----------------------tccaaacttgtttaatttttgtggaatctt |
163 |
Q |
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| T |
19625502 |
ggacttatttatctacttatataaacgcacttttctggtaagtgcttatgctatttatttaagctgtttatccaaacttgtttaatttttgtggaatctt |
19625601 |
T |
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| Q |
164 |
aaggggtaggtaaccatgacgaatacttgcttcccatactttctcaatgttaaatacagtgtcgccacactcatg |
238 |
Q |
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| T |
19625602 |
aaggggtaggtaaccatgacgaatacttgcttcccatactttctcaatgttaaatacagtgtcgccacactcatg |
19625676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 19691301 - 19691194
Alignment:
| Q |
131 |
ttatccaaacttgtttaatttttgtggaatcttaaggggtaggtaaccatgacgaatacttgcttcccatactttctcaatgttaaatacagtgtcgcca |
230 |
Q |
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| T |
19691301 |
ttatccaaacttgtctgattagtttggaatcttaaggggtaggaaaccatggcgaatacttgcttcccatactttctcaatgtcaaatacagtgtcacca |
19691202 |
T |
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| Q |
231 |
cactcatg |
238 |
Q |
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|||||||| |
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| T |
19691201 |
cactcatg |
19691194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 19701886 - 19701779
Alignment:
| Q |
131 |
ttatccaaacttgtttaatttttgtggaatcttaaggggtaggtaaccatgacgaatacttgcttcccatactttctcaatgttaaatacagtgtcgcca |
230 |
Q |
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| T |
19701886 |
ttatccaaacttgtctgattagtttggaatcttaaggggtaggaaaccatggcgaatacttgcttcccatactttctcaatgtcaaatacagtgtcacca |
19701787 |
T |
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| Q |
231 |
cactcatg |
238 |
Q |
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|||||||| |
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| T |
19701786 |
cactcatg |
19701779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 35360753 - 35360690
Alignment:
| Q |
175 |
aaccatgacgaatacttgcttcccatactttctcaatgttaaatacagtgtcgccacactcatg |
238 |
Q |
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| T |
35360753 |
aaccatgacgaatacttgcttcccaaactttctcaatgctaagtatagtgtcaccacattcatg |
35360690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 35383143 - 35383062
Alignment:
| Q |
157 |
gaatcttaaggggtaggtaaccatgacgaatacttgcttcccatactttctcaatgttaaatacagtgtcgccacactcatg |
238 |
Q |
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| T |
35383143 |
gaatctttagaggttggaaaccatgacgaatacttgcttcccaaactttctcagtgctaagtatagtgtcaccacattcatg |
35383062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 35373122 - 35373059
Alignment:
| Q |
175 |
aaccatgacgaatacttgcttcccatactttctcaatgttaaatacagtgtcgccacactcatg |
238 |
Q |
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||||||||||||||||||||||||| ||||||||| || ||| || |||||| ||||| ||||| |
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| T |
35373122 |
aaccatgacgaatacttgcttcccaaactttctcagtgctaagtatagtgtcaccacattcatg |
35373059 |
T |
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