View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11567_low_18 (Length: 252)
Name: NF11567_low_18
Description: NF11567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11567_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 19691502 - 19691744
Alignment:
| Q |
1 |
cttcttttttggctagggttacaactattgtaaaattatgttgtttgcggttcgtcaaaatcataataaaaatggttagtttctatttatacaaatgtac |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19691502 |
cttcttttttggctagggttacaactcttgtaaaattatgttgtttgcggttcgtcaaaatcataataaaaatggttagtttctatttatacaaatgtac |
19691601 |
T |
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| Q |
101 |
tcaatttatttattgattttatcgaagttaatttcaagtatcgttgttcacgctacaaggggacctccatgggcattgcattatgtatattgagaagtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19691602 |
tcaatttatttattgattttatcgaagttaatttcaagtatcgttgttcacgctacaaggggacctccatgggcattgcattatgtatattgagaaataa |
19691701 |
T |
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| Q |
201 |
atacaaaaccatgtttttctttggaggcctagggtttctctgc |
243 |
Q |
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| T |
19691702 |
atacaaaaccatgtttttctttggaggcctagggtttctctgc |
19691744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 19702087 - 19702329
Alignment:
| Q |
1 |
cttcttttttggctagggttacaactattgtaaaattatgttgtttgcggttcgtcaaaatcataataaaaatggttagtttctatttatacaaatgtac |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19702087 |
cttcttttttggctagggttacaactcttgtaaaattatgttgtttgcggttcgtcaaaatcataataaaaatggttagtttctatttatacaaatgtac |
19702186 |
T |
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| Q |
101 |
tcaatttatttattgattttatcgaagttaatttcaagtatcgttgttcacgctacaaggggacctccatgggcattgcattatgtatattgagaagtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19702187 |
tcaatttatttattgattttatcgaagttaatttcaagtatcgttgttcacgctacaaggggacctccatgggcattgcattatgtatattgagaaataa |
19702286 |
T |
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| Q |
201 |
atacaaaaccatgtttttctttggaggcctagggtttctctgc |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19702287 |
atacaaaaccatgtttttctttggaggcctagggtttctctgc |
19702329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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