View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11567_low_2 (Length: 602)
Name: NF11567_low_2
Description: NF11567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11567_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Complemental strand, 40666679 - 40666093
Alignment:
| Q |
1 |
caaaattattgaagtaacaa-tagaatgctaaaaccatacaagaaattataaaaatacaaatagtctcgtcaaaatttatcgattttcttgatagtcgtc |
99 |
Q |
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| T |
40666679 |
caaaattattgaagtaaaaaatagaatgctaaaaccatacaagaaattataaaaatacaaatagtctcgtcaaaatttatcgattttcttgatagttgtc |
40666580 |
T |
|
| Q |
100 |
gtaaataatcttaaaacaacagctaaaaatgaacaaagcgagtaataagagacgggataatatgatataacacttactagggtgggacaccttatgcaag |
199 |
Q |
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| T |
40666579 |
gtaaataattttaaaacaacagctaaaaatgaacagagcgagtaataagagacgggataatatgatataacacttactagggtgggacaccttatgcaag |
40666480 |
T |
|
| Q |
200 |
atgcatagcacaagcaacctgtcaccggaagagagaatgatacccttggcatgaacatgatcgatgacgagcttaatatcgtgctcattgcggtcccttg |
299 |
Q |
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| T |
40666479 |
atgcatagcacaagcaacctgtcaccggaagagagaatgatatccttggcatgaacatgatcgatgacgagcttaatatcgtgctcattgcggtcccttg |
40666380 |
T |
|
| Q |
300 |
tggcatcacaagcaacaatgatgcaagaaggagaaggaggactgtccatatatattcaaatcaacattaatgtgaatcataagctcattacggttccttt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666379 |
tggcatcacaagcaacaatgatgcaagaaggagaaggaggactgtccatatatattcaaatcaacattaatgtgaatcataagctcattacggttccttt |
40666280 |
T |
|
| Q |
400 |
tttgctagcagaaagtgtaatattggtatatattgtcctgataagtagaagtggcattgattaatgaaatcatggaccaatgattcaatgacagaagctt |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666279 |
tttgctagcagaaagtgtaatattggtatatattgtcctgataagtagaagtggcattgattaatgaaatcatggaccaatgattcaatgacagaagctt |
40666180 |
T |
|
| Q |
500 |
tcttcttcccttgtcacaacactggtcatgtttcttgatgatgtgacaacatcaagaaaagatgcttagaatattcttggtacaaat |
586 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666179 |
tcttcttcccttgtcacaacactggtcatgtttcttgatgatgtgacaacatcaagaaaagatgcttagaatattcttggtacaaat |
40666093 |
T |
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