View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11567_low_22 (Length: 245)
Name: NF11567_low_22
Description: NF11567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11567_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 37602254 - 37602479
Alignment:
| Q |
1 |
catatgagatgttcattcattgcaggtgttgttgactccaactcatttagcaatagtgatggaatatgctgctgggggagaactatttgaaagaatttgt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37602254 |
catatgatatgttcattcattgcaggtgttgttgactccaactcatttagcaatagtgatggaatatgctgctgggggagaactatttgaaagaatttgt |
37602353 |
T |
|
| Q |
101 |
actgctggtagattcagtgaggacgaggtagtttattataataagccattatcttaattaactgttctagattctagaaaacagtaagtaggatttcatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37602354 |
actgctggtagattcagtgaggacgaggtagtttattataataagccattatcttaattaactgttctagattctagaaaacagtaattaggatttcatg |
37602453 |
T |
|
| Q |
201 |
caagtaatatattaacaagtgggggt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
37602454 |
caagtaatatattaacaagtgggggt |
37602479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 39883048 - 39882962
Alignment:
| Q |
23 |
caggtgttgttgactccaactcatttagcaatagtgatggaatatgctgctgggggagaactatttgaaagaatttgtactgctggt |
109 |
Q |
| |
|
|||||| | ||||| || ||||||||||||||||| ||||| ||||| ||||| || ||||| ||||| || || |||| ||||||| |
|
|
| T |
39883048 |
caggtggttttgacccctactcatttagcaatagtaatggagtatgcagctggaggggaactctttgagaggatctgtaatgctggt |
39882962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 39410978 - 39411074
Alignment:
| Q |
35 |
actccaactcatttagcaatagtgatggaatatgctgctgggggagaactatttgaaagaatttgtactgctggtagattcagtgaggacgaggtag |
131 |
Q |
| |
|
|||||| ||||| |||| ||||||||||| |||||||| || |||||||||||||||||||| || | |||||||||||| |||| |||||||||| |
|
|
| T |
39410978 |
actccagctcatctagctatagtgatggagtatgctgcaggaggagaactatttgaaagaatatgcagtgctggtagattttgtgaagacgaggtag |
39411074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 44633111 - 44633002
Alignment:
| Q |
20 |
ttgcaggtgttgttgactccaactcatttagcaatagtgatggaatatgctgctgggggagaactatttgaaagaatttgtactgctggtagattcagtg |
119 |
Q |
| |
|
||||||||| | ||||||||||| ||||||||||| |||||||| ||||| ||||| |||||||| ||||| || || || | |||||| || ||||||| |
|
|
| T |
44633111 |
ttgcaggtggttttgactccaacacatttagcaattgtgatggagtatgcagctggaggagaactctttgagaggatatgcaatgctggcaggttcagtg |
44633012 |
T |
|
| Q |
120 |
aggacgaggt |
129 |
Q |
| |
|
| || ||||| |
|
|
| T |
44633011 |
aagatgaggt |
44633002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 543063 - 543172
Alignment:
| Q |
20 |
ttgcaggtgttgttgactccaactcatttagcaatagtgatggaatatgctgctgggggagaactatttgaaagaatttgtactgctggtagattcagtg |
119 |
Q |
| |
|
||||||||| | |||||||| || ||| | | ||||| ||||| ||||||||||| ||||| || ||||| ||||||| ||||||| |||||||||| |
|
|
| T |
543063 |
ttgcaggtggttttgactcctacacatcttggtatagttatggagtatgctgctggtggagagctctttgaccgaatttgctctgctggaagattcagtg |
543162 |
T |
|
| Q |
120 |
aggacgaggt |
129 |
Q |
| |
|
| |||||||| |
|
|
| T |
543163 |
aagacgaggt |
543172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 27106297 - 27106205
Alignment:
| Q |
38 |
ccaactcatttagcaatagtgatggaatatgctgctgggggagaactatttgaaagaatttgtactgctggtagattcagtgaggacgaggta |
130 |
Q |
| |
|
||||| ||| |||| || || ||||| || |||||||| |||||||| ||||| || || |||| |||||||||||| ||||| || |||||| |
|
|
| T |
27106297 |
ccaacacatctagccattgtaatggagtacgctgctggaggagaactgtttgagaggatatgtagtgctggtagatttagtgaagatgaggta |
27106205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University