View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11567_low_5 (Length: 410)

Name: NF11567_low_5
Description: NF11567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11567_low_5
NF11567_low_5
[»] chr3 (12 HSPs)
chr3 (5-403)||(5248715-5249113)
chr3 (5-403)||(4390025-4390408)
chr3 (74-403)||(5266617-5266946)
chr3 (84-304)||(6723230-6723450)
chr3 (259-304)||(6140944-6140989)
chr3 (347-404)||(6915638-6915695)
chr3 (226-304)||(6850572-6850650)
chr3 (254-304)||(6915759-6915809)
chr3 (259-304)||(6257860-6257905)
chr3 (259-304)||(6264340-6264385)
chr3 (347-404)||(6592788-6592845)
chr3 (347-404)||(7748539-7748596)
[»] scaffold1643 (1 HSPs)
scaffold1643 (215-304)||(828-917)


Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 5 - 403
Target Start/End: Complemental strand, 5249113 - 5248715
Alignment:
Q  5 catttggaagaattacatatcatatacagtgacaatgccactagagaaatcaataacttgataattgaaagggaaatgactgtcttggaggcccttgaac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5249113 catttggaagaattacatatcatatacagtgacaatgccactagagaaatcaataacttgataattgaaagggaaatgactgtcttggaggcccttgaac 5249014  T
Q  105 caaatagtaaccttaatatgctgaccatcaaacactatcgaggcactagctttccaaactggcttcggggtagtcatttgttcaatttagaatctctgga 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5249013 caaatagtaaccttaatatgctgaccatcaaacactatcgaggcactagctttccaaactggcttgggggtagtcatttgttcaatttagaatctctgga 5248914  T
Q  205 tccggtaggatgtgaattttgttcccattttccaccatttgagttgtttccctatctcaagaagctttatatttcaggttgtcatggaatagagatcatt 304  Q
    || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5248913 tctggtaggatgtgaattttgttcccatttgccaccatttgagttgtttccctatctcaagaagctttatatttcaggttgtcatggaatagagatcatt 5248814  T
Q  305 aattcatcaaatgatccattcaagtttctcgaatatttgtattttgagaacatgtccaattggaagaaatggttatgtgttgagtgtttccctttgctt 403  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5248813 aattcatcaaatgatccattcaagtttctcgaatttttgtattttgagaacatgtccaattggaagaaatggttatgtgttgagtgtttccctttgctt 5248715  T

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Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 5 - 403
Target Start/End: Original strand, 4390025 - 4390408
Alignment:
Q  5 catttggaagaattacatatcatatacagtgacaatgccactagagaaatcaataacttgataattgaaagggaaatgactgtcttggaggcccttgaac 104  Q
    |||||||||||||||||||||||||||||||   || |||||||||||||||||||                |||||| ||||||||||||| ||| |||    
T  4390025 catttggaagaattacatatcatatacagtgcttataccactagagaaatcaataat---------------gaaatgtctgtcttggaggctcttcaac 4390109  T
Q  105 caaatagtaaccttaatatgctgaccatcaaacactatcgaggcactagctttccaaactggcttcggggtagtcatttgttcaatttagaatctctgga 204  Q
    ||||||| ||||||||||   |||||||| ||||||| || |||||||| |||||||| ||| |||||| |  |||||||| || ||||| ||||||  |    
T  4390110 caaatagcaaccttaataacttgaccatcgaacactaccgcggcactagttttccaaattggattcgggattttcatttgtccagtttagtatctctaaa 4390209  T
Q  205 tccggtaggatgtgaattttgttcccattttccaccatttgagttgtttccctatctcaagaagctttatatttcaggttgtcatggaatagagatcatt 304  Q
    || |  ||||||| || |||||||||| || ||||||||||||  ||||||||||||||| || |||| ||||||| | |||| ||||||||||||||||    
T  4390210 tctgaaaggatgtcaactttgttcccagttgccaccatttgagaagtttccctatctcaataatctttgtatttcaagctgtcctggaatagagatcatt 4390309  T
Q  305 aattcatcaaatgatccattcaagtttctcgaatatttgtattttgagaacatgtccaattggaagaaatggttatgtgttgagtgtttccctttgctt 403  Q
    ||||||    ||| |||||||| ||| || |||  ||||   |||||| ||||||||||||||||| ||||||||||||||||  ||||||||||||||    
T  4390310 aattcaattgatgttccattcaggttccttgaaattttgcgatttgaggacatgtccaattggaaggaatggttatgtgttgaaggtttccctttgctt 4390408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 74 - 403
Target Start/End: Complemental strand, 5266946 - 5266617
Alignment:
Q  74 agggaaatgactgtcttggaggcccttgaaccaaatagtaaccttaatatgctgaccatcaaacactatcgaggcactagctttccaaactggcttcggg 173  Q
    ||||||||| ||||||||||||| ||| |||||||||| |||||||||| |||||||||| | ||||| | ||||||||| |||||||| |||||| |||    
T  5266946 agggaaatgtctgtcttggaggctcttcaaccaaatagcaaccttaataagctgaccatcgagcactacccaggcactagttttccaaattggcttgggg 5266847  T
Q  174 gtagtcatttgttcaatttagaatctctggatccggtaggatgtgaattttgttcccattttccaccatttgagttgtttccctatctcaagaagcttta 273  Q
    || ||||||||| |||||||  ||||||  ||| |  ||||||| ||||||||||| | || |||| |||||  ||||||||| ||||||||| |||||     
T  5266846 gttgtcatttgtccaatttatcatctctcaatctgagaggatgtaaattttgttccaagttgccacaatttggcttgtttccccatctcaagatgctttc 5266747  T
Q  274 tatttcaggttgtcatggaatagagatcattaattcatcaaatgatccattcaagtttctcgaatatttgtattttgagaacatgtccaattggaagaaa 373  Q
    ||||||| | |||| | || | |||||||||||||||||||||  |||||||| || |||  ||   ||| ||||| |  ||||||| | ||||||| ||    
T  5266746 tatttcaagctgtcctagagtggagatcattaattcatcaaatagtccattcaggtctctgaaaacattgcatttttatgacatgtctagttggaaggaa 5266647  T
Q  374 tggttatgtgttgagtgtttccctttgctt 403  Q
    ||||||||||||||  ||||||||||||||    
T  5266646 tggttatgtgttgaaagtttccctttgctt 5266617  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 304
Target Start/End: Original strand, 6723230 - 6723450
Alignment:
Q  84 ctgtcttggaggcccttgaaccaaatagtaaccttaatatgctgaccatcaaacactatcgaggcactagctttccaaactggcttcggggtagtcattt 183  Q
    ||||||||||||| ||| |||||||||  ||||| |  | ||| ||||||||| ||||| |||||| |||||||||||| ||| || ||  | |||||||    
T  6723230 ctgtcttggaggctcttcaaccaaataaaaacctcatgaggctcaccatcaaagactatggaggcagtagctttccaaattgggttgggtatcgtcattt 6723329  T
Q  184 gttcaatttagaatctctggatccggtaggatgtgaattttgttcccattttccaccatttgagttgtttccctatctcaagaagctttatatttcaggt 283  Q
       |||||||| |||||| ||   | | |||||| |||| |||||||| || |||||| ||| |  ||| |||| |||| |||||||||  ||||||||     
T  6723330 acccaatttagtatctcttgaattgttgggatgtaaattctgttcccagttaccaccacttgggcagttcccctttctcgagaagctttccatttcaggc 6723429  T
Q  284 tgtcatggaatagagatcatt 304  Q
    ||| |||||||||||| ||||    
T  6723430 tgtgatggaatagagaccatt 6723450  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 6140989 - 6140944
Alignment:
Q  259 tctcaagaagctttatatttcaggttgtcatggaatagagatcatt 304  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||    
T  6140989 tctcaagaagctttccatttcaggctgtcatggaatagagatcatt 6140944  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 404
Target Start/End: Complemental strand, 6915695 - 6915638
Alignment:
Q  347 tttgagaacatgtccaattggaagaaatggttatgtgttgagtgtttccctttgcttc 404  Q
    |||||| |||||||| | |||||| ||||||||||| |||| ||||||||||||||||    
T  6915695 tttgagcacatgtccgaatggaaggaatggttatgtcttgaatgtttccctttgcttc 6915638  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 304
Target Start/End: Original strand, 6850572 - 6850650
Alignment:
Q  226 ttcccattttccaccatttgagttgtttccctatctcaagaagctttatatttcaggttgtcatggaatagagatcatt 304  Q
    |||||| |||||| || ||| | |||| |||| ||||||||| ||||  |||||||| ||| |||||||||||||||||    
T  6850572 ttcccagtttccatcacttgggctgttcccctctctcaagaatctttccatttcaggctgtgatggaatagagatcatt 6850650  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 6915809 - 6915759
Alignment:
Q  254 ccctatctcaagaagctttatatttcaggttgtcatggaatagagatcatt 304  Q
    |||| |||||||||||||| ||||||||| ||| |||||||||| ||||||    
T  6915809 ccctctctcaagaagctttttatttcaggctgtgatggaatagaaatcatt 6915759  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 6257905 - 6257860
Alignment:
Q  259 tctcaagaagctttatatttcaggttgtcatggaatagagatcatt 304  Q
    ||||||||||||||  |||||||| |||||||||||| ||||||||    
T  6257905 tctcaagaagctttccatttcaggctgtcatggaataaagatcatt 6257860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 6264385 - 6264340
Alignment:
Q  259 tctcaagaagctttatatttcaggttgtcatggaatagagatcatt 304  Q
    ||||||||||||||  |||||||| ||||||||| |||||||||||    
T  6264385 tctcaagaagctttccatttcaggctgtcatggagtagagatcatt 6264340  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 404
Target Start/End: Original strand, 6592788 - 6592845
Alignment:
Q  347 tttgagaacatgtccaattggaagaaatggttatgtgttgagtgtttccctttgcttc 404  Q
    ||||||||||||||  | |||||| ||||||||||| ||||  |||||||||||||||    
T  6592788 tttgagaacatgtctgaatggaaggaatggttatgtcttgaaggtttccctttgcttc 6592845  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 404
Target Start/End: Complemental strand, 7748596 - 7748539
Alignment:
Q  347 tttgagaacatgtccaattggaagaaatggttatgtgttgagtgtttccctttgcttc 404  Q
    |||||| |||||||  | |||||| ||||||||||| |||| ||||||||||||||||    
T  7748596 tttgagcacatgtcagaatggaaggaatggttatgtcttgaatgtttccctttgcttc 7748539  T

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Target: scaffold1643 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 304
Target Start/End: Complemental strand, 917 - 828
Alignment:
Q  215 tgtgaattttgttcccattttccaccatttgagttgtttccctatctcaagaagctttatatttcaggttgtcatggaatagagatcatt 304  Q
    |||| ||| |||||||||||||||||| ||| |  | |||| | ||||||||| |||| |||||||  |||| |||||||| ||||||||    
T  917 tgtggattatgttcccattttccaccacttgggcagcttccttctctcaagaatctttctatttcatattgtgatggaataaagatcatt 828  T

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