View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11567_low_8 (Length: 391)
Name: NF11567_low_8
Description: NF11567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11567_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 40314665 - 40314957
Alignment:
| Q |
12 |
gatggacatcattggcataaatattgctgcatttcttgagttgtacttgctgnnnnnnnnnnnnnnnnnnnnaaagaaatattgtacttgctgctatttg |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40314665 |
gatggacattattggcataaatattgctgcatttcttgagttgtacttgctgtttttttttt----------aaagaaatattgtacttgctgctatttg |
40314754 |
T |
|
| Q |
112 |
gccgctttatggaagtcctttctccttggtattttcatttcgatattaaaatgagttctttcaatttctagaccatgaggcataaagtacaatcatgtgc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40314755 |
gccgctttatggaagtcctttctccttggtattttcatttcgatattaaaatgagttctttcaatttctagagcatgaggcataaagtacaatcatgtgc |
40314854 |
T |
|
| Q |
212 |
tatcaataagtaatgcatctaaaggtacaatcaaatatcaactatacagtcacattgttcctaataagtatctcattcaagaatctattttacccatgta |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40314855 |
tatcaataagtaatgcatctaaaggtacaatcaaatatcaactatacagtcacattgttcctaataagtatctcattcaagaatctattttacccatgta |
40314954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 376
Target Start/End: Original strand, 40315018 - 40315067
Alignment:
| Q |
327 |
acaacatttgatactttctctaacaacagaagaatgccgacgtgctcctt |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40315018 |
acaacatttgatactttctctaacaacagaagaatgccgacgtgctcctt |
40315067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University