View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11567_low_9 (Length: 353)
Name: NF11567_low_9
Description: NF11567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11567_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 333
Target Start/End: Complemental strand, 56076100 - 56075773
Alignment:
| Q |
11 |
gatgaatacagcggtgttatagtcgaattaatggatcaccctataatggattctacaaccttcttatccattcttagaccttcaatttctaactggaaac |
110 |
Q |
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| T |
56076100 |
gatgaatacagcggtgttatagtcgaattaatggatcaccctatcatggattctacaaccttcttatccattcttagaccttcaatttctaactggaaac |
56076001 |
T |
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| Q |
111 |
aacaggtactattaattaattactaaccctaatagatgcaattttgtatgtgtataacgttttgttttgatgctcatcttgttttgttagtaagttctgt |
210 |
Q |
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| T |
56076000 |
aacaggtactatta----attactaactctaatagatgcaattttgtatgtgtataac-----gttttgatgctcatcttg-tttgttagtaagttctgt |
56075911 |
T |
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| Q |
211 |
tatccttaatcaatttaaaggataggatacttcacagcaaaacttaagatt---------------tggaatatctatattattaagtttctgttcatgt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
56075910 |
tatccttaatcaatttaaaggataggatacttcacagcaaaacttaagatttggcacactacactatggaatatctatattattaagtttctgttcatgt |
56075811 |
T |
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| Q |
296 |
acttagttaggcaatatggcatttccatataaagtttc |
333 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
56075810 |
cattagttaggcaatatggcatttccatataaagtttc |
56075773 |
T |
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