View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11568_high_1 (Length: 726)
Name: NF11568_high_1
Description: NF11568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11568_high_1 |
 | |
|
| [»] scaffold0961 (1 HSPs) |
| | |
|
| [»] scaffold1825 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 365
Target Start/End: Original strand, 5920989 - 5921337
Alignment:
| Q |
17 |
aattgaaagcttggatttgcaaaatcttcccaaatagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactaggagaaagaaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5920989 |
aattgaaagcttggatttgcaaaatcttcccaagtagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactaggagaaagaaaa |
5921088 |
T |
|
| Q |
117 |
attgaaggcttgaatttaggggtaattaggtaagtacttgtaccttgagaaattaaaggttgaaaaatgattttgatctgccgcagaagctcagatttgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5921089 |
attgaaggcttgaatttaggggtaattaggtaagtacttgtaccttgagaaattaaaggttgaaaagtgattttgatctgccgcagaagctcagatttgt |
5921188 |
T |
|
| Q |
217 |
agcgtcaaaccaaaccgcgtttgagcacttgccgtacaatctacagaatcgcgtttgaattcatcaaaacatcataggaaccgccgaactcgcgtttgga |
316 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5921189 |
agcgtcatcccaaaccgcgtttgagcacttgccgtacaatctacagaatcgcgtttgaattcatccaaacatcataggaaccgccgaactcgcgtttgga |
5921288 |
T |
|
| Q |
317 |
gaagaaaacgtgggtttgaggcgtgaagaagctttaccaaacatgcact |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5921289 |
gaagaaaacgtgggtttgaggcgtgaagaagctttaccaaacatgcact |
5921337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 36307515 - 36307163
Alignment:
| Q |
17 |
aattgaaagcttggatttgcaaaatcttcccaaatagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactaggagaaagaaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36307515 |
aattgaaagcttggatttgcaaaatcttcccaagtagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactaggagaaagaaaa |
36307416 |
T |
|
| Q |
117 |
attgaaggcttgaatttaggggtaattaggtaagtacttgtaccttgagaaattaaaggttgaaaaatgattttgatctgccgcagaagctcagatttgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36307415 |
attgaaggcttgaatttaggggtaattaggtaagtacttgtaccttgagaaattaaaggttgaaaagtgattttgatctgccgcagaagctcagatttgt |
36307316 |
T |
|
| Q |
217 |
agcgtcaaaccaaaccgcgtttgagcacttgccgtacaatctacagaatcgcgtttgaattcatcaaaacatcataggaaccgccgaactcgcgtttgga |
316 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36307315 |
agcgtcatcccaaaccgcgtttgagcacttgccgtacaatctacagaatcgcgtttgaattcatccaaacatcataggaaccgccgaactcgcgtttgga |
36307216 |
T |
|
| Q |
317 |
gaagaaaacgtgggtttgaggcgtgaagaagctttaccaaacatgcacttagt |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36307215 |
gaagaaaacgtgggtttgaggcgtgaagaagctttaccaaacatgcacatagt |
36307163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 23357746 - 23357661
Alignment:
| Q |
64 |
aaggttgaagtgatgtgaagtaatgaaaaggaagaaaactag-gagaaagaaaaattgaaggcttgaatttaggggtaattaggtaa |
149 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| | | |||||||| |||||||||||||||||||| |||||||| ||||| |
|
|
| T |
23357746 |
aaggttgaagtgatgtgaagtaatgaaa-ggaagaaaggttgtgagaaagagaaattgaaggcttgaatttatgggtaatttggtaa |
23357661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 645 - 692
Target Start/End: Original strand, 34332528 - 34332575
Alignment:
| Q |
645 |
aacactttataagtgagatgattcataaatttaatgtcttaatatttt |
692 |
Q |
| |
|
|||||||||||||||| |||| | |||||||||||||||||| ||||| |
|
|
| T |
34332528 |
aacactttataagtgacatgacttataaatttaatgtcttaagatttt |
34332575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 1e-86; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 22477423 - 22477233
Alignment:
| Q |
17 |
aattgaaagcttggatttgcaaaatcttcccaaatagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactaggagaaagaaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22477423 |
aattgaaagcttggatttgcaaaatcttcccaagtagcagaaaattgaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgggagaaagaaaa |
22477324 |
T |
|
| Q |
117 |
attgaaggcttgaatttaggggtaattaggtaagtacttgtaccttgagaaattaaaggttgaaaaatgattttgatctgccgcagaagct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
22477323 |
attgaaggcttgaatttaggggtaattaggtaagtacttgtcccttgagaaattaaaggttgaaaagtgattttgatttgccgtagaagct |
22477233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 195 - 367
Target Start/End: Original strand, 8049739 - 8049911
Alignment:
| Q |
195 |
tgccgcagaagctcagatttgtagcgtcaaaccaaaccgcgtttgagcacttgccgtacaatctacagaatcgcgtttgaattcatcaaaacatcatagg |
294 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||| |||||| ||||| |
|
|
| T |
8049739 |
tgccgcagaagctcagaattgtagcttcaaaccaaaccgagtttgagcacttgccgtacaatctacagaatcacgtttgaatttatccaaacattatagg |
8049838 |
T |
|
| Q |
295 |
aaccgccgaactcgcgtttggagaagaaaacgtgggtttgaggcgtgaagaagctttaccaaacatgcactta |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| | ||||| ||||||| ||||||| |
|
|
| T |
8049839 |
aaccgccgaactcgcgtttggagaagaaaacgtgggtttggggcgtgaaaacgctttgccaaacaggcactta |
8049911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 195 - 369
Target Start/End: Original strand, 7386587 - 7386761
Alignment:
| Q |
195 |
tgccgcagaagctcagatttgtagcgtcaaaccaaaccgcgtttgagcacttgccgtacaatctacagaatcgcgtttgaattcatcaaaacatcatagg |
294 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||| |||||||||||| |
|
|
| T |
7386587 |
tgccgcagaagctcagatttgtagcttcaaaccaaaccgcgtttgagcacttatcgtacaatctacaaaaccgcgtttgaattcatccaaacatcatagg |
7386686 |
T |
|
| Q |
295 |
aaccgccgaactcgcgtttggagaagaaaacgtgggtttgaggcgtgaagaagctttaccaaacatgcacttagt |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| | ||||| | ||||| ||| ||||| |
|
|
| T |
7386687 |
aaccgccgaactcgcgtttggagaagaaaacgtgggtttggggcgtgaaaacgctttgctaaacaggcatttagt |
7386761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 195 - 365
Target Start/End: Original strand, 39988660 - 39988830
Alignment:
| Q |
195 |
tgccgcagaagctcagatttgtagcgtcaaaccaaaccgcgtttgagcacttgccgtacaatctacagaatcgcgtttgaattcatcaaaacatcatagg |
294 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||| |||||| ||||| |
|
|
| T |
39988660 |
tgccgcagaagctcagatttgtagcttcaaaccaaaccgagtttgagcacttgccgtacaatctacagaatcacgtttgaatttatccaaacattatagg |
39988759 |
T |
|
| Q |
295 |
aaccgccgaactcgcgtttggagaagaaaacgtgggtttgaggcgtgaagaagctttaccaaacatgcact |
365 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||| | ||||| ||||||| ||||| |
|
|
| T |
39988760 |
aaccgccgaactcgcgtttggagatgaaaacgtgggtttggggcgtgaaaacgctttgccaaacaggcact |
39988830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 41741209 - 41741324
Alignment:
| Q |
64 |
aaggttgaagtgatgtgaagtaatgaaaaggaagaaaactagga-gaaagaaaaattgaaggcttgaatttaggggtaattaggt-aagtacttgtacct |
161 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||| | | | |||||| |||||||||||||||||||| |||||||| ||| |||||| || || |
|
|
| T |
41741209 |
aaggttgaaatgatgtgaagtaatgaaa-ggaagaaagtttgtaagaaagagaaattgaaggcttgaatttatgggtaatttggtaaagtacctgccact |
41741307 |
T |
|
| Q |
162 |
tgagaaattaaaggttg |
178 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
41741308 |
tgagaaattataggttg |
41741324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 1e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 35574077 - 35574267
Alignment:
| Q |
17 |
aattgaaagcttggatttgcaaaatcttcccaaatagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactaggagaaagaaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35574077 |
aattgaaagcttggatttgcaaaatcttcccaagtagcagaaaattgaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgggagaaagaaaa |
35574176 |
T |
|
| Q |
117 |
attgaaggcttgaatttaggggtaattaggtaagtacttgtaccttgagaaattaaaggttgaaaaatgattttgatctgccgcagaagct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
35574177 |
attgaaggcttgaatttaggggtaattaggtaagtacttgtcccttgagaaattaaaggttgaaaagtgattttgatttgccgtagaagct |
35574267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 109 - 208
Target Start/End: Complemental strand, 35535581 - 35535482
Alignment:
| Q |
109 |
aaagaaaaattgaaggcttgaatttaggggtaattaggtaagtacttgtaccttgagaaattaaaggttgaaaaatgattttgatctgccgcagaagctc |
208 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| || |||| |||||||| |||||||| |
|
|
| T |
35535581 |
aaagagaaattgaaggcttgaatttaggggtaattaggtaagtacctgtcacttgagaaattaaaggctgaaacgtggttttcatctgccgtagaagctc |
35535482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 292336 - 292421
Alignment:
| Q |
64 |
aaggttgaagtgatgtgaagtaatgaaaaggaagaaaactag-gagaaagaaaaattgaaggcttgaatttaggggtaattaggtaa |
149 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| | | |||||||| |||||||||||||||||||| |||||||| ||||| |
|
|
| T |
292336 |
aaggttgaagtgatgtgaagtaatgaaa-ggaagaaaggttgtgagaaagagaaattgaaggcttgaatttatgggtaatttggtaa |
292421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 7e-82; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 16543714 - 16543524
Alignment:
| Q |
17 |
aattgaaagcttggatttgcaaaatcttcccaaatagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactaggagaaagaaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
16543714 |
aattgaaagcttggatttgcaaaatcttccgaagtagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaagaaagaaaactgggagaaagaaaa |
16543615 |
T |
|
| Q |
117 |
attgaaggcttgaatttaggggtaattaggtaagtacttgtaccttgagaaattaaaggttgaaaaatgattttgatctgccgcagaagct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
16543614 |
attgaaggcttgaatttaggggtaattaggtaagtacatgtcccttgagaaattaaaggttgaaaagtggttttgatctgccgtagaagct |
16543524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 17834422 - 17834612
Alignment:
| Q |
17 |
aattgaaagcttggatttgcaaaatcttcccaaatagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactaggagaaagaaaa |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| || |
|
|
| T |
17834422 |
aattgaaagcttggatttgtaaaatcttcccaagtagcagaaaatttaaggttgaagtgatgtgaagaaacaaaaaggaagaaaactgtgagaaagagaa |
17834521 |
T |
|
| Q |
117 |
attgaaggcttgaatttaggggtaattaggtaagtacttgtaccttgagaaattaaaggttgaaaaatgattttgatctgccgcagaagct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| ||||||| |
|
|
| T |
17834522 |
attgaaggcttgaatttaggggtaattaggtaagtacttgtcccttgagaaattaaaggttgaaacgtggttttgatctgccatagaagct |
17834612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 204 - 370
Target Start/End: Complemental strand, 24633345 - 24633180
Alignment:
| Q |
204 |
agctcagatttgtagcgtcaaaccaaaccgcgtttgagcacttgccgtacaatctacagaatcgcgtttgaattcatcaaaacatcataggaaccgccga |
303 |
Q |
| |
|
|||| ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| |||||| |
|
|
| T |
24633345 |
agcttagatttgtagcttcaaaccaaaccacgtttgagcacttgcc-tacaatctacagaatcgcgtttgaattcatccaaacatcatgggaatcgccga |
24633247 |
T |
|
| Q |
304 |
actcgcgtttggagaagaaaacgtgggtttgaggcgtgaagaagctttaccaaacatgcacttagtc |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| | ||||| |||||||||||||||||| |
|
|
| T |
24633246 |
actcgcgtttggagaagaaaacgtgggtttggggcgtgaaaacgctttgccaaacatgcacttagtc |
24633180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 640 - 673
Target Start/End: Original strand, 6071175 - 6071208
Alignment:
| Q |
640 |
ggttgaacactttataagtgagatgattcataaa |
673 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
6071175 |
ggttgaacactttataagtgagatgatccataaa |
6071208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0961 (Bit Score: 135; Significance: 6e-70; HSPs: 1)
Name: scaffold0961
Description:
Target: scaffold0961; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 690 - 880
Alignment:
| Q |
17 |
aattgaaagcttggatttgcaaaatcttcccaaatagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactaggagaaagaaaa |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |
|
|
| T |
690 |
aattgaaagcttggatttgtaaaatcttccgaagtagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaattgtgagaaagagaa |
789 |
T |
|
| Q |
117 |
attgaaggcttgaatttaggggtaattaggtaagtacttgtaccttgagaaattaaaggttgaaaaatgattttgatctgccgcagaagct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || |||||||| |||| ||||||| |
|
|
| T |
790 |
attgaaggcttgaatttaggggtaattaggtaagtacctgtcccttgagaaattaaaggttgaaacgtggttttgatcagccgtagaagct |
880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 540 - 712
Target Start/End: Original strand, 22923197 - 22923367
Alignment:
| Q |
540 |
ttttttatatcctctgtttacataaaccaattgtatgttaggttgtacttattgtgtgggaagaataagttaaaaatcatatgttatttacaaaagaagg |
639 |
Q |
| |
|
||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||| | |
|
|
| T |
22923197 |
ttttttatatcctctatttatataaacaaattgtatgttaggttgtacttattgtgtggggacaataagttaaaaatcat--gttatttacaaaagaaag |
22923294 |
T |
|
| Q |
640 |
ggttgaacactttataagtgagatgattcataaatttaatgtcttaatattttacattaaagtgtgatgtcca |
712 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22923295 |
ggttgaacacgttataagtgagatgatttataaatttaatgtcttaatattttacattaaagtgtaatgtcca |
22923367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 37634599 - 37634515
Alignment:
| Q |
17 |
aattgaaagcttggatttgcaaaatcttcccaaatagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaact |
103 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| || |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37634599 |
aattgaaagcttggatatgcaaaatcttcacaatta--agaaaatttaagtttgaagtgatgtgaagtaatgaaaaggaagaaaact |
37634515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 3750275 - 3750120
Alignment:
| Q |
21 |
gaaagcttggatttgcaaaatcttcccaaatagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactag-gagaaagaaaaatt |
119 |
Q |
| |
|
|||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| | ||| ||||||| | | |||||||| ||||| |
|
|
| T |
3750275 |
gaaagcttggatatgcaaaatcttcacaa------gaaaatttaaggttgaagtgatgtgaagtaacg-aaacaaagaaaaattgtgagaaagagaaatt |
3750183 |
T |
|
| Q |
120 |
gaaggcttgaatttaggggtaattaggt-aagta-cttgtaccttgagaaattaaaggttgaa |
180 |
Q |
| |
|
|||||||| |||||| ||||||||||| ||||| || || |||||||||||||||||||| |
|
|
| T |
3750182 |
gaaggcttaaatttataggtaattaggtaaagtacctaccactttgagaaattaaaggttgaa |
3750120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 364 - 434
Target Start/End: Original strand, 22923028 - 22923096
Alignment:
| Q |
364 |
cttagtcatttttctacgactattttagtttctcccgcgtgttctatgcagtttgaattttagaatttgaa |
434 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
22923028 |
cttagtcatttttctatgactattttagtttctcccgc--tttctattcagtttgaattttagaatttgaa |
22923096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 109 - 199
Target Start/End: Complemental strand, 19095528 - 19095438
Alignment:
| Q |
109 |
aaagaaaaattgaaggcttgaatttaggggtaattaggtaagtacttgtaccttgagaaattaaaggttgaaaaatgattttgatctgccg |
199 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||| || |||||||||||||||| ||||| || |||| |||||||| |
|
|
| T |
19095528 |
aaagagaaattgaaggcttgaatttaagggtaattaggtaagtacctgccacttgagaaattaaaggctgaaacgtggttttcatctgccg |
19095438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 1e-58; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 15606615 - 15606424
Alignment:
| Q |
17 |
aattgaaagcttggatttgcaaaatcttcccaaatagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactaggagaaagaaaa |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
15606615 |
aattgaaagcttggatatgcaaaatcttcacaattagtagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgtgagaaagagaa |
15606516 |
T |
|
| Q |
117 |
attgaaggcttgaatttaggggtaattaggtaagtacttgtaccttgagaaattaaaggttgaaaaatgattttgatctgccgcagaagctc |
208 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| || |||||||||||||||| ||||| || |||| |||||||| |||||||| |
|
|
| T |
15606515 |
tttgaaggcttgaatttagaggtaattaggtaagtacctgccacttgagaaattaaaggctgaaacgtggttttcatctgccgtagaagctc |
15606424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 15606967 - 15606776
Alignment:
| Q |
17 |
aattgaaagcttggatttgcaaaatcttcccaaatagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactaggagaaagaaaa |
116 |
Q |
| |
|
||||||||||||| || |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
15606967 |
aattgaaagcttgaatatgcaaaatcttcacaattagtagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgtgagaaagagaa |
15606868 |
T |
|
| Q |
117 |
attgaaggcttgaatttaggggtaattaggtaagtacttgtaccttgagaaattaaaggttgaaaaatgattttgatctgccgcagaagctc |
208 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| || |||||||||||||||| ||||| || |||| |||||||| |||||||| |
|
|
| T |
15606867 |
tttgaaggcttgaatttagaggtaattaggtaagtacctgccacttgagaaattaaaggctgaaacgtggttttcatctgccgtagaagctc |
15606776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 16561633 - 16561501
Alignment:
| Q |
17 |
aattgaaagcttggatttgcaaaatcttcccaaatagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactaggagaaagaaaa |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| | |
|
|
| T |
16561633 |
aattgaaagcttggatatgcaaaatcttcacaattagcagaaaatttaagtttgaagtgatgtgaagtaataaaaaggaagaaaactgtgagaaagagag |
16561534 |
T |
|
| Q |
117 |
attgaaggcttgaatttaggggtaattaggtaa |
149 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| |
|
|
| T |
16561533 |
attgaaggcttgaatttatgggtaatttggtaa |
16561501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 28987914 - 28988004
Alignment:
| Q |
90 |
aaaggaagaaaactag-gagaaagaaaaattgaaggcttgaatttaggggtaattaggt-aagtacttgtaccttgagaaattaaaggttg |
178 |
Q |
| |
|
||||||||||| || | |||||||| |||||| || |||||||||| |||||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
28987914 |
aaaggaagaaagcttgtgagaaagagaaattggagacttgaatttatgggtaattaggtaaagtacctgccacttgagaaattaaaggttg |
28988004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 8e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 23493607 - 23493415
Alignment:
| Q |
17 |
aattgaaagcttggatttgcaaaatcttcccaaatagcagaaaatttaaggttgaa-gtgatgtgaagtaatgaaaaggaagaaaactaggagaaagaaa |
115 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
23493607 |
aattgaaatcttggatatgcaaaatcttcacaattagcagaaaatttaagtttgaaagtgatgtgaagtaatgaaaaggaagaaaactatgagaaagaga |
23493508 |
T |
|
| Q |
116 |
aattgaaggcttgaatttaggggtaattaggtaagtacttgtaccttgagaaattaaaggttgaaaaatgattttgatctgccgcagaagctc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||| | ||| || |||| |||||||| |||||||| |
|
|
| T |
23493507 |
aattgaaggcttgaatttaggggtaattaggtaagtacctgccacttgagaaattaaaggcttaaacgtggtttttatctgccgtagaagctc |
23493415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 16250806 - 16250937
Alignment:
| Q |
17 |
aattgaaagcttggatttgcaaaatcttcccaaatagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactag-gagaaagaaa |
115 |
Q |
| |
|
||||||||||||| || ||||||||| | ||| || |||||||||||||||||||||||||||||||||| ||||||| |||| | | |||||||| | |
|
|
| T |
16250806 |
aattgaaagcttgaatatgcaaaatcaccacaa-taacagaaaatttaaggttgaagtgatgtgaagtaat-taaaggaaaaaaagttgtgagaaagaga |
16250903 |
T |
|
| Q |
116 |
aattgaaggcttgaatttaggggtaattaggtaa |
149 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
16250904 |
aattgaaggcttgaatttataggtaattaggtaa |
16250937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1825 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold1825
Description:
Target: scaffold1825; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 391 - 307
Alignment:
| Q |
17 |
aattgaaagcttggatttgcaaaatcttcccaaatagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaact |
103 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| || |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
391 |
aattgaaagcttggatatgcaaaatcttcacaatta--agaaaatttaagtttgaagtgatgtgaagtaatgaaaaggaagaaaact |
307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 29022731 - 29022652
Alignment:
| Q |
64 |
aaggttgaagtgatgtgaagtaatgaaaaggaagaaaactag-gagaaagaaaaattgaaggcttgaatttaggggtaatt |
143 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| | | |||||||| ||||||||| |||||||||| |||||||| |
|
|
| T |
29022731 |
aaggttgaagtgatgtgaagtaatg-aaaggaagaaaggttgtgagaaagagaaattgaagacttgaatttatgggtaatt |
29022652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 36114637 - 36114732
Alignment:
| Q |
109 |
aaagaaaaattgaaggcttgaatttaggggtaattaggtaagtacttgtaccttgagaaattaaaggttgaaaaatgattttgatctgccgcagaa |
204 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| | || ||||| |||||||||| ||||| || |||| |||||||| |||| |
|
|
| T |
36114637 |
aaagagaaattgaaggcttgaatttaagggtaattaggtaagtgcctgccacttgaaaaattaaaggctgaaacgtggttttcatctgccgtagaa |
36114732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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