View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11568_high_4 (Length: 239)
Name: NF11568_high_4
Description: NF11568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11568_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 35 - 223
Target Start/End: Original strand, 27489562 - 27489746
Alignment:
| Q |
35 |
ttccaactcagacttactacacaacagaaatcacacacatagtttgtaaacctaagaaacagcgcattgaaaatagatagcttagcatgtatgattaaaa |
134 |
Q |
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| T |
27489562 |
ttccaactcagacttactacacaacacaaatcacacacagagtttgtaaacctaacaaacagcgcattgaaaatag----cttagcatgtatgattaaaa |
27489657 |
T |
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| Q |
135 |
cctaattaatatataaaatgttgcattttaggaagaaagaaagaacataatgcaattaggtaagctgataaatgaaaagaaaaagaaga |
223 |
Q |
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| T |
27489658 |
cctaattaatatataaaatgttgcattttaggaagaaagaaagaacataatgcaattaggtaagctgataaatgaaaagaagaagaaga |
27489746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 27486289 - 27486356
Alignment:
| Q |
111 |
atagcttagcatgtatgattaaaacctaattaatatataaaatgttgcattttaggaagaaagaaagaa |
179 |
Q |
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| T |
27486289 |
atagcttagcatgtatgattaaaatctaattaatatataaaatg-tgcattttaggaaggaagaaagaa |
27486356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 25390021 - 25390061
Alignment:
| Q |
20 |
taagcaatgtgagatttccaactcagacttactacacaaca |
60 |
Q |
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| T |
25390021 |
taagcaatgtgagatttctaactcaaacttgctacacaaca |
25390061 |
T |
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