View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11568_high_5 (Length: 218)
Name: NF11568_high_5
Description: NF11568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11568_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 12422123 - 12422308
Alignment:
| Q |
21 |
gtattcctagggttaaacattttgaataagaaaatattaaatagttcaaaacaatcataaatgcaaagaagggagtggtagatcctcatattaaaatttt |
120 |
Q |
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||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12422123 |
gtattgctagggttaaacattttgcaaaagaaaatattaaatagttcaaaacaatcataaatgcaaagaagggagtggtagatcctcatattaaattttt |
12422222 |
T |
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| Q |
121 |
cagattttattaagcttttagtttacttgtaagaaaagtaacaataaccacttac-----agttcagaagttatttctttatgtct |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| |
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| T |
12422223 |
tagattttattaagcttttagtttacttgtaagaaaagtaacaataaccactttcagctaagttcagaagttatttcttcatgtct |
12422308 |
T |
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