View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11568_low_3 (Length: 361)

Name: NF11568_low_3
Description: NF11568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11568_low_3
NF11568_low_3
[»] chr7 (15 HSPs)
chr7 (161-345)||(21883014-21883198)
chr7 (3-132)||(41329440-41329569)
chr7 (3-132)||(32653480-32653609)
chr7 (3-128)||(35296788-35296913)
chr7 (46-148)||(39981318-39981420)
chr7 (1-114)||(43442731-43442844)
chr7 (59-128)||(41328240-41328309)
chr7 (1-132)||(666743-666874)
chr7 (1-63)||(10955931-10955993)
chr7 (57-132)||(669412-669487)
chr7 (1-107)||(44376656-44376762)
chr7 (1-107)||(44385523-44385629)
chr7 (4-45)||(43931840-43931881)
chr7 (3-50)||(26146677-26146724)
chr7 (95-132)||(32653729-32653766)
[»] chr2 (13 HSPs)
chr2 (3-129)||(28610042-28610168)
chr2 (3-128)||(4919848-4919973)
chr2 (3-148)||(19397531-19397676)
chr2 (37-151)||(8321247-8321361)
chr2 (46-128)||(28611265-28611347)
chr2 (3-110)||(45699568-45699675)
chr2 (56-128)||(4921081-4921153)
chr2 (72-126)||(45699523-45699577)
chr2 (53-130)||(19398820-19398897)
chr2 (37-114)||(25561663-25561740)
chr2 (1-49)||(16289877-16289925)
chr2 (3-50)||(1147848-1147895)
chr2 (31-108)||(25559323-25559400)
[»] chr4 (21 HSPs)
chr4 (3-132)||(26495139-26495268)
chr4 (3-132)||(8363359-8363488)
chr4 (3-132)||(36244737-36244866)
chr4 (3-132)||(56156952-56157081)
chr4 (3-128)||(52137447-52137572)
chr4 (56-132)||(36243536-36243612)
chr4 (1-114)||(35348832-35348945)
chr4 (46-128)||(26496322-26496404)
chr4 (1-114)||(36846528-36846640)
chr4 (55-128)||(56157518-56157591)
chr4 (46-128)||(20620160-20620242)
chr4 (46-128)||(20625517-20625599)
chr4 (1-114)||(39056460-39056573)
chr4 (1-109)||(26631187-26631295)
chr4 (46-135)||(52138808-52138896)
chr4 (1-115)||(49895074-49895189)
chr4 (31-108)||(37106248-37106325)
chr4 (1-116)||(44499952-44500067)
chr4 (3-45)||(43895590-43895632)
chr4 (3-36)||(29665547-29665580)
chr4 (3-43)||(46795999-46796039)
[»] chr1 (12 HSPs)
chr1 (3-132)||(14479485-14479614)
chr1 (3-135)||(28051578-28051709)
chr1 (3-128)||(51446813-51446938)
chr1 (3-148)||(40533574-40533719)
chr1 (53-132)||(28050338-28050417)
chr1 (1-128)||(12667243-12667370)
chr1 (46-128)||(14478287-14478369)
chr1 (46-128)||(51445611-51445693)
chr1 (1-114)||(48528865-48528978)
chr1 (53-151)||(40634711-40634809)
chr1 (69-114)||(48527569-48527614)
chr1 (3-43)||(50679794-50679834)
[»] chr3 (8 HSPs)
chr3 (3-132)||(13621928-13622057)
chr3 (3-132)||(49380924-49381053)
chr3 (3-114)||(14744098-14744209)
chr3 (46-128)||(13620941-13621023)
chr3 (51-128)||(49379722-49379799)
chr3 (1-63)||(7271562-7271624)
chr3 (1-63)||(10301786-10301848)
chr3 (4-49)||(34123303-34123348)
[»] scaffold0114 (1 HSPs)
scaffold0114 (6-132)||(38557-38683)
[»] chr5 (14 HSPs)
chr5 (3-132)||(11796586-11796714)
chr5 (1-114)||(10736906-10737019)
chr5 (46-128)||(23325933-23326015)
chr5 (69-132)||(11797569-11797632)
chr5 (46-128)||(23333980-23334062)
chr5 (1-63)||(9219262-9219324)
chr5 (53-114)||(41144538-41144599)
chr5 (1-114)||(4124792-4124905)
chr5 (3-45)||(1273190-1273232)
chr5 (53-115)||(13520802-13520864)
chr5 (38-108)||(41143281-41143351)
chr5 (3-36)||(18695620-18695653)
chr5 (6-43)||(21389119-21389156)
chr5 (3-43)||(8188173-8188213)
[»] chr8 (10 HSPs)
chr8 (3-148)||(42793700-42793845)
chr8 (46-128)||(9854892-9854974)
chr8 (3-127)||(9853589-9853713)
chr8 (1-109)||(43203248-43203356)
chr8 (3-132)||(38697173-38697302)
chr8 (1-114)||(31844403-31844516)
chr8 (69-132)||(28291401-28291464)
chr8 (69-132)||(28291312-28291375)
chr8 (3-45)||(16362520-16362562)
chr8 (53-113)||(38697904-38697964)
[»] scaffold0219 (2 HSPs)
scaffold0219 (3-128)||(6916-7040)
scaffold0219 (69-132)||(8226-8289)
[»] chr6 (5 HSPs)
chr6 (46-148)||(11722787-11722889)
chr6 (46-119)||(21777497-21777570)
chr6 (3-56)||(138176-138229)
chr6 (3-56)||(146197-146250)
chr6 (1-49)||(18242278-18242326)
[»] scaffold0084 (1 HSPs)
scaffold0084 (3-45)||(11807-11849)


Alignment Details
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 161 - 345
Target Start/End: Original strand, 21883014 - 21883198
Alignment:
Q  161 atgctttcattataactatttttcacttcataccatgctaagaatctttgttttaacattagggacttaaaatgttcctccttcttttgtatgtatgaat 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21883014 atgctttcattataactatttttcacttcataccatgctaagaatctttgttttaacattagggacttaaaatgttcctccttcttttgtatgtatgaat 21883113  T
Q  261 agaaggaaactaggcaaccatgtgatgaatcttcactaaatttgatgaaatagcatgatctgtgttacattttcaagcagtaact 345  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21883114 agaaggaaactaggcaaacatgtgatgaatcttcactaaatttgatgaaatagcatgatctgtgttacattttcaagcagtaact 21883198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 41329440 - 41329569
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    |||||||| |||| ||||||||||  |||||||||||| ||| ||||| ||||||| |||||||||||||||||||||||| ||||||||||||| ||||    
T  41329440 atcaaaaaatttaaacattaaaaatctaacggaggggatcaatttgactgacggagtaaaatcaaggggaccaaaatgtgagttttacaatttataggac 41329539  T
Q  103 caaaatgtaaactcataattatttagggga 132  Q
    ||||||||||||||||||||||||||||||    
T  41329540 caaaatgtaaactcataattatttagggga 41329569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 32653609 - 32653480
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    |||||||||||||| |||||||||| ||||||| |||||||   ||||||||||||||||| |||||||||| |||||||| |||||||||||||| |||    
T  32653609 atcaaaaattttagtcattaaaaaactaacggatgggaccattctgaccgacggagcaaaaccaaggggaccgaaatgtgagttttacaatttatgagac 32653510  T
Q  103 caaaatgtaaactcataattatttagggga 132  Q
    |||||||||||| |||||||||||| ||||    
T  32653509 caaaatgtaaacgcataattatttaaggga 32653480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 35296788 - 35296913
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    |||||||| |||||||||||||||||||||||||  || ||| |||||  ||||||||||| |||||| |||||||||||| ||||||||||||| ||||    
T  35296788 atcaaaaaatttagacattaaaaaattaacggagatgatcaatttgactaacggagcaaaaccaagggtaccaaaatgtgagttttacaatttataggac 35296887  T
Q  103 caaaatgtaaactcataattatttag 128  Q
    |||||||||||||   ||||||||||    
T  35296888 caaaatgtaaactacaaattatttag 35296913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 39981420 - 39981318
Alignment:
Q  46 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggggatcatttgtgcaat 145  Q
    ||||| |||| ||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||  ||| ||||    
T  39981420 ttgactgacgaagcaaaaccaaaaggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaacgcacaattatttagaggatcaaatgtccaat 39981321  T
Q  146 taa 148  Q
    |||    
T  39981320 taa 39981318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 43442731 - 43442844
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgg 99  Q
    |||||||||| |||||||||||||| | ||||||||||||||||||||||  ||||||||||| |||| |||||||||||||  ||||||| | ||||||    
T  43442731 aaatcaaaaaatttagacattaaaagactaacggaggggaccaaattgactaacggagcaaaa-caagagggaccaaaatgttgattttacgagttatgg 43442829  T
Q  100 gaccaaaatgtaaac 114  Q
    |||||| ||| ||||    
T  43442830 gaccaatatgaaaac 43442844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 41328309 - 41328240
Alignment:
Q  59 caaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 128  Q
    ||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  41328309 caaaaccaagaggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaacgcataattatttag 41328240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 666874 - 666743
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgg 99  Q
    |||||||||| ||| |||||||||| | ||||||||||||||||||||||  ||||||||||| |||| |||||| |||| | |||||||  | |||||     
T  666874 aaatcaaaaaatttcgacattaaaatactaacggaggggaccaaattgactaacggagcaaaa-caagagggaccgaaatattaattttatgagttatga 666776  T
Q  100 gaccaaaatgtaaactcataattatttagggga 132  Q
    || ||||||| ||||| ||||||||||||||||    
T  666775 gatcaaaatgaaaactgataattatttagggga 666743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10955993 - 10955931
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaa 63  Q
    ||||||||||||||||||||||||||  ||||||||||||| ||||||||  |||||||||||    
T  10955993 aaatcaaaaattttagacattaaaaatctaacggaggggactaaattgactaacggagcaaaa 10955931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 669412 - 669487
Alignment:
Q  57 agcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttagggga 132  Q
    |||||||| || |||||| ||||||  ||||||| | |||||||||||||||| ||||| ||||||| ||||||||    
T  669412 agcaaaataaaagggaccgaaatgttgattttacgaattatgggaccaaaatgaaaactgataattacttagggga 669487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 44376656 - 44376762
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatggg 100  Q
    |||||||||| |||||||||||||||| |||||||| |||  || |||||  | |||||||||   | ||||||||||||   |||||| || |||||||    
T  44376656 aaatcaaaaaatttagacattaaaaaactaacggagtggattaatttgactaatggagcaaaagttaagggaccaaaatgatgattttaaaagttatggg 44376755  T
Q  101 accaaaa 107  Q
    |||||||    
T  44376756 accaaaa 44376762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 44385523 - 44385629
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatggg 100  Q
    |||||||||| |||||||||||||||| |||||||| |||  || |||||  | |||||||||   | ||||||||||||   |||||| || |||||||    
T  44385523 aaatcaaaaaatttagacattaaaaaactaacggagtggattaatttgactaatggagcaaaagttaagggaccaaaatgatgattttaaaagttatggg 44385622  T
Q  101 accaaaa 107  Q
    |||||||    
T  44385623 accaaaa 44385629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 43931840 - 43931881
Alignment:
Q  4 tcaaaaattttagacattaaaaaattaacggaggggaccaaa 45  Q
    |||||||| ||||||||||||||| |||||||||||||||||    
T  43931840 tcaaaaatgttagacattaaaaaactaacggaggggaccaaa 43931881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 26146677 - 26146724
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgac 50  Q
    |||||||| |||||||||||||||| |||||||||||| ||| |||||    
T  26146677 atcaaaaagtttagacattaaaaaaataacggaggggatcaatttgac 26146724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 32653729 - 32653766
Alignment:
Q  95 tatgggaccaaaatgtaaactcataattatttagggga 132  Q
    |||||||||||||||||||  |||||||||||||||||    
T  32653729 tatgggaccaaaatgtaaatacataattatttagggga 32653766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 28610168 - 28610042
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    ||||||||||||| ||||||||||| ||||||| |||| ||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28610168 atcaaaaattttaaacattaaaaaactaacggatgggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgaattttacaatttatgggac 28610069  T
Q  103 caaaatgtaaactcataattatttagg 129  Q
    |||||||||||||||||||||||||||    
T  28610068 caaaatgtaaactcataattatttagg 28610042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 4919973 - 4919848
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    |||||||| ||||||  |||||||| ||| |||||||| ||| ||||| |||||||||||| |||||||||||||||||| |||||| ||||||||||||    
T  4919973 atcaaaaaatttagatgttaaaaaactaatggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtggattttataatttatgggac 4919874  T
Q  103 caaaatgtaaactcataattatttag 128  Q
    |||| ||||||  |||||||||||||    
T  4919873 caaattgtaaatgcataattatttag 4919848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 148
Target Start/End: Complemental strand, 19397676 - 19397531
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    ||||||| ||||||||||||||||| ||||||| ||||||    ||||  |||||||||||  |  ||||||||||||| | ||||| ||||||||||||    
T  19397676 atcaaaagttttagacattaaaaaaataacggaagggacctttatgactaacggagcaaaacgagagggaccaaaatgttagttttaaaatttatgggac 19397577  T
Q  103 caaaatgtaaactcataattatttaggggatcatttgtgcaattaa 148  Q
    |||||||||||||  ||||||||||||||| ||||  |||||||||    
T  19397576 caaaatgtaaactggtaattatttaggggaccattgatgcaattaa 19397531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 8321247 - 8321361
Alignment:
Q  37 gggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggggatcat 136  Q
    |||| ||| ||||||||||||||||||| || ||||| |||||||   ||||| |||||||||||||||||||||||| ||||||||||||| ||||||     
T  8321247 gggatcaatttgaccgacggagcaaaattaaagggactaaaatgttggttttaaaatttatgggaccaaaatgtaaacgcataattatttagaggatcaa 8321346  T
Q  137 ttgtgcaattaaacc 151  Q
     ||| ||||||||||    
T  8321347 atgtccaattaaacc 8321361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 28611265 - 28611347
Alignment:
Q  46 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 128  Q
    ||||| |||||||||||| |||  |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  28611265 ttgactgacggagcaaaaccaaaaggaccaaaatatgaattttacaatttatgggaccaaaatgtaaacgcataattatttag 28611347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 45699675 - 45699568
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    |||||||| |||||| ||||||||| ||| |||||||  ||| ||||| |||||||||||| ||| ||||| ||||||||| ||||||||||||||| ||    
T  45699675 atcaaaaaatttagatattaaaaaactaatggagggggtcaatttgactgacggagcaaaaccaaagggactaaaatgtgagttttacaatttatggaac 45699576  T
Q  103 caaaatgt 110  Q
    ||||||||    
T  45699575 caaaatgt 45699568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 4921081 - 4921153
Alignment:
Q  56 gagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 128  Q
    |||||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||    
T  4921081 gagcaaaaccaagaggaccaaaatgtgagttttacaatttatgggactaaaatgtaaacgcataattatttag 4921153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 45699577 - 45699523
Alignment:
Q  72 accaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattattt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45699577 accaaaatgtgaattttacaatttatgggaccaaaatgtaaacacataattattt 45699523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 19398820 - 19398897
Alignment:
Q  53 acggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggg 130  Q
    ||||||||||| |||| |||||||||||||   ||||||||||||||||||||||||||||||   |||||||||||||    
T  19398820 acggagcaaaa-caagagggaccaaaatgtaggttttacaatttatgggaccaaaatgtaaaccggtaattatttaggg 19398897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 25561663 - 25561740
Alignment:
Q  37 gggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaac 114  Q
    ||||||| |||||| || ||||||||| ||| |||||||||  ||  |||||| ||||||||||||||||||| ||||    
T  25561663 gggaccatattgactgatggagcaaaagcaaagggaccaaatcgttgattttagaatttatgggaccaaaatgaaaac 25561740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 16289925 - 16289877
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattga 49  Q
    |||| |||||||||||||||||||||| ||| ||||||| |||||||||    
T  16289925 aaataaaaaattttagacattaaaaaactaatggaggggtccaaattga 16289877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 1147895 - 1147848
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgac 50  Q
    |||||||| |||||||||||||||| |||||||||||| ||| |||||    
T  1147895 atcaaaaagtttagacattaaaaaaataacggaggggatcaatttgac 1147848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 25559400 - 25559323
Alignment:
Q  31 acggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaat 108  Q
    ||||| |||||||  ||||| |||||||||||| ||| |||||||||  ||  |||||| || |||||||||||||||    
T  25559400 acggaagggaccatcttgactgacggagcaaaagcaaagggaccaaatcgttgattttagaacttatgggaccaaaat 25559323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 8e-46; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 26495268 - 26495139
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    ||||||||||||| ||||||||||| |||||||||||| ||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||||| |||     
T  26495268 atcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttataggag 26495169  T
Q  103 caaaatgtaaactcataattatttagggga 132  Q
    ||||||||||||||||||||||||||||||    
T  26495168 caaaatgtaaactcataattatttagggga 26495139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 8363359 - 8363488
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    ||||||||||||| ||||||||||| |||||||||||| ||| |||||  ||||||||||| ||| ||||||||||||||| ||||||||||||| ||||    
T  8363359 atcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactaacggagcaaaaccaaagggaccaaaatgtgagttttacaatttataggac 8363458  T
Q  103 caaaatgtaaactcataattatttagggga 132  Q
    ||||||||||||||||||||||||||||||    
T  8363459 caaaatgtaaactcataattatttagggga 8363488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 36244737 - 36244866
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    |||||| |||||| ||||||||||| |||||||||||| ||| ||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||     
T  36244737 atcaaacattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaatcaaggggacaaaaatgtgagttttacaatttatgggat 36244836  T
Q  103 caaaatgtaaactcataattatttagggga 132  Q
    |||||||||||||||||||||||| |||||    
T  36244837 caaaatgtaaactcataattattttgggga 36244866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 56157081 - 56156952
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    ||||||||||||| ||||||||||| |||||||||||  ||| ||||  |||||||||||| ||||| ||||||||||||| ||||||||||||||||||    
T  56157081 atcaaaaattttaaacattaaaaaactaacggagggggtcaatttgattgacggagcaaaaccaaggagaccaaaatgtgagttttacaatttatgggac 56156982  T
Q  103 caaaatgtaaactcataattatttagggga 132  Q
    ||||||||||||||||||||||||||||||    
T  56156981 caaaatgtaaactcataattatttagggga 56156952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 52137572 - 52137447
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    |||||||| |||||||||| ||||| ||||||||  ||  || ||||||||||||| |||| |||| ||||||||||||   ||||||||||||||||||    
T  52137572 atcaaaaaatttagacattgaaaaactaacggagatgatgaatttgaccgacggagtaaaaccaagaggaccaaaatgttggttttacaatttatgggac 52137473  T
Q  103 caaaatgtaaactcataattatttag 128  Q
    |||||||||||| |||||||||||||    
T  52137472 caaaatgtaaacacataattatttag 52137447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 36243612 - 36243536
Alignment:
Q  56 gagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttagggga 132  Q
    ||||||||  |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36243612 gagcaaaactaaggggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatttagggga 36243536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 35348945 - 35348832
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgg 99  Q
    ||||||||||||||||||||||||||  ||||||||||||| |||||||| |||| ||||||| |||| ||||| |||| ||  ||||||||| ||||||    
T  35348945 aaatcaaaaattttagacattaaaaagctaacggaggggactaaattgactgacgaagcaaaa-caagagggactaaaacgttgattttacaagttatgg 35348847  T
Q  100 gaccaaaatgtaaac 114  Q
    |||||||||| ||||    
T  35348846 gaccaaaatgaaaac 35348832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 26496322 - 26496404
Alignment:
Q  46 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 128  Q
    ||||| |||||||||||   ||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||    
T  26496322 ttgactgacggagcaaacctaagaggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaacacataattagttag 26496404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 36846528 - 36846640
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgg 99  Q
    |||||||||| ||||||||||||||| | |||||| ||||||||||||||  ||||||||||| |||| |||||||||||||  ||||||| | ||||||    
T  36846528 aaatcaaaaaatttagacattaaaaact-aacggaagggaccaaattgacgaacggagcaaaa-caagagggaccaaaatgttgattttacgagttatgg 36846625  T
Q  100 gaccaaaatgtaaac 114  Q
    |||||||||| ||||    
T  36846626 gaccaaaatgaaaac 36846640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 56157518 - 56157591
Alignment:
Q  55 ggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 128  Q
    ||||||||| ||| ||||||||||||||| ||||||||||||||  |||||||||||||| |||||||||||||    
T  56157518 ggagcaaaaccaaagggaccaaaatgtgagttttacaatttatgaaaccaaaatgtaaacgcataattatttag 56157591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 20620242 - 20620160
Alignment:
Q  46 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 128  Q
    ||||| |||||| ||||| |||| ||||  || ||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  20620242 ttgactgacggaccaaaaccaagaggactcaactgtgagttttacaacttatgggaccaaaatgtaaactcataattatttag 20620160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 20625517 - 20625599
Alignment:
Q  46 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 128  Q
    ||||| |||||| ||||| |||| ||||  || ||| | |||||||| |||||||||||||||||||||||||||||||||||    
T  20625517 ttgactgacggaccaaaaccaagaggactcaactgtaagttttacaacttatgggaccaaaatgtaaactcataattatttag 20625599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 39056573 - 39056460
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgg 99  Q
    ||||||||||||||||||||||||||  |||||| ||| || ||||||||  ||||||||||| |||| ||||| |||| ||  ||||||||| |||||     
T  39056573 aaatcaaaaattttagacattaaaaagctaacggtgggaactaaattgactaacggagcaaaa-caagagggactaaaacgttgattttacaaattatga 39056475  T
Q  100 gaccaaaatgtaaac 114  Q
    |||||||||| ||||    
T  39056474 gaccaaaatgaaaac 39056460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 26631187 - 26631295
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgg 99  Q
    |||||||||| |||||||||||||  |  |||||||||||||||||||||  ||||||||||| |||| || ||||||||||  ||||||| | |||||     
T  26631187 aaatcaaaaaatttagacattaaaggacaaacggaggggaccaaattgactaacggagcaaaa-caagaggaaccaaaatgttgattttacgagttatga 26631285  T
Q  100 gaccaaaatg 109  Q
    ||||||||||    
T  26631286 gaccaaaatg 26631295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 52138808 - 52138896
Alignment:
Q  46 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggggatca 135  Q
    |||||| ||||||||||| |||| ||||||||||| |  | |||||||||||| || |||||| ||||| ||||||||||||| ||||||    
T  52138808 ttgaccaacggagcaaaaccaagaggaccaaaatgggg-tcttacaatttatgtgatcaaaatataaacgcataattatttagaggatca 52138896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 49895189 - 49895074
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaa-tcaaggggaccaaaatgtgaattttacaatttatgg 99  Q
    ||||||||||  |||| |||||| ||| ||||||  | |||||||||||  |||||||||||| |  ||||||||||||||  |||| || || ||||||    
T  49895189 aaatcaaaaaaattaggcattaagaaactaacggtagagaccaaattgaatgacggagcaaaagttgaggggaccaaaatgataattatagaacttatgg 49895090  T
Q  100 gaccaaaatgtaaact 115  Q
    |||||||||| |||||    
T  49895089 gaccaaaatgaaaact 49895074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 37106248 - 37106325
Alignment:
Q  31 acggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaat 108  Q
    ||||| ||||||| |||||| |||||||||||| ||| |||||||||  ||  |||||| || |||||||||||||||    
T  37106248 acggaagggaccatattgactgacggagcaaaagcaaagggaccaaatcgttgattttagaacttatgggaccaaaat 37106325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 44499952 - 44500067
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatggg 100  Q
    |||||||||| | |||||||||| ||| |||||||| ||| ||| |||||  |||||||||||   | ||||||||||||   ||||||  | |||||||    
T  44499952 aaatcaaaaaatatagacattaacaaactaacggagtggatcaatttgactaacggagcaaaagttaagggaccaaaatgatgattttaagagttatggg 44500051  T
Q  101 accaaaatgtaaactc 116  Q
    ||||||| | ||||||    
T  44500052 accaaaacgaaaactc 44500067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 43895590 - 43895632
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaa 45  Q
    ||||||||| ||||||||||||||||||||||||  |||||||    
T  43895590 atcaaaaatattagacattaaaaaattaacggagatgaccaaa 43895632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 29665547 - 29665580
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggag 36  Q
    |||||||| |||||||||||||||||||||||||    
T  29665547 atcaaaaaatttagacattaaaaaattaacggag 29665580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 46795999 - 46796039
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggacca 43  Q
    |||||||| |||||||||||||||| |||||||| ||||||    
T  46795999 atcaaaaaatttagacattaaaaaactaacggagaggacca 46796039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 14479485 - 14479614
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    |||||||||||||  |||||||||| |||||||||||| ||| ||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  14479485 atcaaaaattttaatcattaaaaaactaacggaggggatcaatttgactgatggagcaaaaccaaggggaccaaaatgtgagttttacaatttatgggac 14479584  T
Q  103 caaaatgtaaactcataattatttagggga 132  Q
    ||||||||||||||||||||||||||||||    
T  14479585 caaaatgtaaactcataattatttagggga 14479614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 28051578 - 28051709
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    ||||||||||||| ||||||||||||||||||| |  | ||| |||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28051578 atcaaaaattttaaacattaaaaaattaacggatga-atcaatttgactaacggagcaaaatcaaggggaccaaaatgtgagttttacaatttatgggac 28051676  T
Q  103 caaaatgtaaactcataattatttaggggatca 135  Q
    |||||||||||||||||||||||||||| ||||    
T  28051677 caaaatgtaaactcataattatttagggaatca 28051709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 51446813 - 51446938
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    |||||||| |||||| ||||||||| |||||||||||| ||| ||||| |||||||||||| ||||||||||||||||||  |||||||||||||| |||    
T  51446813 atcaaaaaatttagatattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgggttttacaatttatgtgac 51446912  T
Q  103 caaaatgtaaactcataattatttag 128  Q
    |||||||||||  |||||||||||||    
T  51446913 caaaatgtaaatgcataattatttag 51446938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 40533574 - 40533719
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    ||||||| ||||||||||||||||||||||||||||||||   |||||  ||||||||||   |  |||||||||||||   ||||||||||||||| ||    
T  40533574 atcaaaagttttagacattaaaaaattaacggaggggacctttttgactaacggagcaaagcgagagggaccaaaatgttggttttacaatttatggaac 40533673  T
Q  103 caaaatgtaaactcataattatttaggggatcatttgtgcaattaa 148  Q
    ||||||||||||| |||||||||||||||| ||||  |||||||||    
T  40533674 caaaatgtaaactgataattatttaggggaccattgatgcaattaa 40533719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 28050417 - 28050338
Alignment:
Q  53 acggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttagggga 132  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  28050417 acggagcaaaatcaaggggaccaaaatgtggattttacaatttatgggaccaaaatgtaaacacataattatttaaggga 28050338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 12667243 - 12667370
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgg 99  Q
    |||||||||| ||| |||||||||||| |||||||||||||||| |||||  ||||||||||| |||| |||||| |||||| |||||||| | || | |    
T  12667243 aaatcaaaaaatttcgacattaaaaaactaacggaggggaccaagttgactaacggagcaaaa-caagagggaccgaaatgttaattttacgaattctag 12667341  T
Q  100 gaccaaaatgtaaactcataattatttag 128  Q
    |||||||||| ||||| ||||||||||||    
T  12667342 gaccaaaatgaaaactgataattatttag 12667370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 14478369 - 14478287
Alignment:
Q  46 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 128  Q
    ||||| |||||||||||| | || |||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||    
T  14478369 ttgactgacggagcaaaacccagaggaccaaaatgtgagttttacaatttatgggatcaaaatgtaaacacataattatttag 14478287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 51445693 - 51445611
Alignment:
Q  46 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 128  Q
    ||||| ||| || ||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  51445693 ttgactgacagatcaaaaccaagaggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaacgcataattatttag 51445611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 48528865 - 48528978
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatggg 100  Q
    ||||||||| ||||||| ||||||||| ||||||| ||||||||||||||  |||||| ||||| |  ||||| |||||||  ||||||| | |||||||    
T  48528865 aaatcaaaagttttagatattaaaaaactaacggatgggaccaaattgactaacggagaaaaataagagggactaaaatgttgattttacgagttatggg 48528964  T
Q  101 accaaaatgtaaac 114  Q
    ||||||||||||||    
T  48528965 accaaaatgtaaac 48528978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 40634711 - 40634809
Alignment:
Q  53 acggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggggatcatttgtgcaattaaacc 151  Q
    ||||||||||||||||||||| ||||||||| |||||  |||||| ||| |||||||||||||   |||||||||||||| ||||| || |||||||||    
T  40634711 acggagcaaaatcaaggggacgaaaatgtgagttttatgatttatcggatcaaaatgtaaactgcaaattatttaggggaccatttatgaaattaaacc 40634809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 48527614 - 48527569
Alignment:
Q  69 gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaac 114  Q
    ||||||||||||| |||||||| | |||||||||||||||||||||    
T  48527614 gggaccaaaatgttaattttacgagttatgggaccaaaatgtaaac 48527569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 50679794 - 50679834
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggacca 43  Q
    |||||||| |||||||||||||||| |||||||| ||||||    
T  50679794 atcaaaaaatttagacattaaaaaactaacggagaggacca 50679834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 13621928 - 13622057
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    ||||||||||||| | ||||||||| |||| ||||||| ||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  13621928 atcaaaaattttaaatattaaaaaactaactgaggggatcaatttgactgacgaagcaaaatcaaggggaccaaaatgtgagttttacaatttataggac 13622027  T
Q  103 caaaatgtaaactcataattatttagggga 132  Q
    ||||||||||||||||||||||||||||||    
T  13622028 caaaatgtaaactcataattatttagggga 13622057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 49380924 - 49381053
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    ||||||||||||| ||||||||||| |||||||||||| ||| ||||| |||||||||||| |||||| |||||||| ||| ||||||||||||| ||||    
T  49380924 atcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaagggtaccaaaatatgagttttacaatttataggac 49381023  T
Q  103 caaaatgtaaactcataattatttagggga 132  Q
    ||||||||||||||||||||||||||||||    
T  49381024 caaaatgtaaactcataattatttagggga 49381053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 14744209 - 14744098
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    |||||||| |||||||||||||||||||||||||  || ||| |||||  ||||||||||| ||| |  |||||||||||| |||||||||||||| |||    
T  14744209 atcaaaaaatttagacattaaaaaattaacggagatgatcaatttgactaacggagcaaaaccaatgaaaccaaaatgtgagttttacaatttatgagac 14744110  T
Q  103 caaaatgtaaac 114  Q
    ||||||||||||    
T  14744109 caaaatgtaaac 14744098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 13621023 - 13620941
Alignment:
Q  46 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 128  Q
    ||||| |||||||||||| |||| |||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||    
T  13621023 ttgactgacggagcaaaaccaagaggaccaaaatgtgagttttacaatttatgagaccaaaatgtaaacgcataattatttag 13620941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 49379799 - 49379722
Alignment:
Q  51 cgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 128  Q
    ||||||||||||| |||| | || ||||||||| |||||||||||||||||||||||| ||||| |||||||||||||    
T  49379799 cgacggagcaaaaccaagagaactaaaatgtgagttttacaatttatgggaccaaaatataaacgcataattatttag 49379722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 7271562 - 7271624
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaa 63  Q
    |||||||||| |||||||||||||||| |||||||||||||  ||||||   |||||||||||    
T  7271562 aaatcaaaaagtttagacattaaaaaactaacggaggggacggaattgaataacggagcaaaa 7271624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 10301786 - 10301848
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaa 63  Q
    |||||||||| |||||||||||||||| |||| ||||  |||||||||||  |||||||||||    
T  10301786 aaatcaaaaaatttagacattaaaaaactaacagaggacaccaaattgactaacggagcaaaa 10301848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 34123348 - 34123303
Alignment:
Q  4 tcaaaaattttagacattaaaaaattaacggaggggaccaaattga 49  Q
    ||||||| |||||||||| ||||| |||||||||||||||| ||||    
T  34123348 tcaaaaaatttagacattgaaaaactaacggaggggaccaagttga 34123303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 6 - 132
Target Start/End: Complemental strand, 38683 - 38557
Alignment:
Q  6 aaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaa 105  Q
    ||||||||||  |||||||||| |||||||||||| ||| ||||| ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||    
T  38683 aaaaattttaatcattaaaaaactaacggaggggatcaatttgactgacggaggaaaaccaaggggaccaaaatgtgagttttacaatttatgggaccaa 38584  T
Q  106 aatgtaaactcataattatttagggga 132  Q
    |||| ||||||||||||||||||||||    
T  38583 aatggaaactcataattatttagggga 38557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 11796714 - 11796586
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    ||||||| ||||| ||||||||||| || |||| |||| ||| ||||| || ||||||||| |||||| |||||||| ||| ||||||||||||||||||    
T  11796714 atcaaaagttttaaacattaaaaaactagcggatgggatcaatttgactgagggagcaaaaccaaggg-accaaaatatgagttttacaatttatgggac 11796616  T
Q  103 caaaatgtaaactcataattatttagggga 132  Q
    ||||||||||||||||||||||||||||||    
T  11796615 caaaatgtaaactcataattatttagggga 11796586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 10736906 - 10737019
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgg 99  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||   ||||||||||| |||| |||||||||||||  ||||||| | ||||||    
T  10736906 aaatcaaaaattttagacattaaaaagttaacggaggggaccaaattgattaacggagcaaaa-caagagggaccaaaatgttgattttacgagttatgg 10737004  T
Q  100 gaccaaaatgtaaac 114  Q
    |||||||||| ||||    
T  10737005 gaccaaaatgaaaac 10737019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 23326015 - 23325933
Alignment:
Q  46 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 128  Q
    ||||| |||||| ||||| |||| ||||  || ||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  23326015 ttgactgacggaccaaaaccaagaggactcaactgtgagttttacaacttatgggaccaaaatgtaaactcataattatttag 23325933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 11797569 - 11797632
Alignment:
Q  69 gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttagggga 132  Q
    |||||||||||||  ||||||| | ||||| |||||||||||||||||||||||||||||||||    
T  11797569 gggaccaaaatgttgattttacgagttatgagaccaaaatgtaaactcataattatttagggga 11797632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 23333980 - 23334062
Alignment:
Q  46 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 128  Q
    ||||| |||||| ||||| |||| ||||  || ||| | |||||||| |||||||||||||||||||||||||||||||||||    
T  23333980 ttgactgacggaccaaaaccaagaggactcaactgttagttttacaacttatgggaccaaaatgtaaactcataattatttag 23334062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 9219324 - 9219262
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaa 63  Q
    |||| |||||||||||||||||||||| |||||||||||| |||||||||  | |||||||||    
T  9219324 aaataaaaaattttagacattaaaaaactaacggaggggatcaaattgactaatggagcaaaa 9219262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 41144538 - 41144599
Alignment:
Q  53 acggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaac 114  Q
    ||||||||||||||| |||||||||| ||  |||||| ||||||||||||||||||| ||||    
T  41144538 acggagcaaaatcaaagggaccaaaacgttgattttagaatttatgggaccaaaatgaaaac 41144599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 4124905 - 4124792
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatggg 100  Q
    ||||||||| ||||| |||||||| || ||| | ||||||||||||| ||  |||||||||||  || |||||||||| ||  ||||||  | ||||||     
T  4124905 aaatcaaaatttttaaacattaaacaactaatgaaggggaccaaattaactaacggagcaaaacaaaagggaccaaaacgttgattttatgaattatgga 4124806  T
Q  101 accaaaatgtaaac 114  Q
    ||||||||| ||||    
T  4124805 accaaaatgaaaac 4124792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 1273232 - 1273190
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaa 45  Q
    ||||||||| ||| ||||||||||| |||||||||||||||||    
T  1273232 atcaaaaatattaaacattaaaaaactaacggaggggaccaaa 1273190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 13520802 - 13520864
Alignment:
Q  53 acggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaact 115  Q
    ||||||||||| |||| |||||||||||||  ||||| ||||||||| || ||| ||||||||    
T  13520802 acggagcaaaaccaagaggaccaaaatgtgggttttataatttatggaactaaagtgtaaact 13520864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 41143351 - 41143281
Alignment:
Q  38 ggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaat 108  Q
    |||||| |||||| ||| |||||||| ||| |||||||||||||  |||||| || ||||| |||||||||    
T  41143351 ggaccatattgactgacagagcaaaaacaaagggaccaaaatgttgattttagaacttatgagaccaaaat 41143281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 18695620 - 18695653
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggag 36  Q
    ||||||||||||||||||||||||| ||||||||    
T  18695620 atcaaaaattttagacattaaaaaactaacggag 18695653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 21389119 - 21389156
Alignment:
Q  6 aaaaattttagacattaaaaaattaacggaggggacca 43  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  21389119 aaaaattttagacattaaaaaactaacggagaggacca 21389156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 8188173 - 8188213
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggacca 43  Q
    |||| |||||||||||||||||||| |||||||| ||||||    
T  8188173 atcagaaattttagacattaaaaaactaacggagaggacca 8188213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 3 - 148
Target Start/End: Complemental strand, 42793845 - 42793700
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatggga 101  Q
    ||||||| |||||||||||||||||||||| |||||||||   |||||  ||||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  42793845 atcaaaagttttagacattaaaaaattaacagaggggacctttttgactaacggagcaaaa-caagagggaccaaaatgttaattttacaatttatggga 42793747  T
Q  102 ccaaaatgtaaactcataattatttaggggatcatttgtgcaattaa 148  Q
    ||||||| ||||||  ||||||||||||||  ||||  |||||||||    
T  42793746 ccaaaatataaactggtaattatttagggggccattaatgcaattaa 42793700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 9854892 - 9854974
Alignment:
Q  46 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 128  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  9854892 ttgactgacggagcaaaatcaagaggaccaaaatgtggattttacaatttatgggaccaaaatgtaaacacataattatttag 9854974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 9853713 - 9853589
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    |||||||| |||||| ||||||||| |||||||||||| ||| ||||| |||||||||||| | ||| ||||||||| | | ||||||||||||||||||    
T  9853713 atcaaaaaatttagatattaaaaaactaacggaggggatcaatttgactgacggagcaaaacccaggagaccaaaatattagttttacaatttatgggac 9853614  T
Q  103 caaaatgtaaactcataattattta 127  Q
    |||||| |||||  |||||||||||    
T  9853613 caaaatataaacatataattattta 9853589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 43203248 - 43203356
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatggg 100  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||| |  |||||  ||||||  ||||||| | |||||||    
T  43203248 aaatcaaaaaatttagacattaaaaaactaacggaggggaccaaattgactgacggagcaaaataagagggacggaaatgttgattttacgagttatggg 43203347  T
Q  101 accaaaatg 109  Q
    |||||||||    
T  43203348 accaaaatg 43203356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 38697302 - 38697173
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    ||||||| ||||||||||||||| | ||||||||||||||   ||||| || |||||||||| || |||||||||||||   ||||| |||||||| |||    
T  38697302 atcaaaagttttagacattaaaatagtaacggaggggacctttttgactgagggagcaaaataaaagggaccaaaatgttggttttataatttatgagac 38697203  T
Q  103 caaaatgtaaactcataattatttagggga 132  Q
    ||||||||||| | ||||||||||| ||||    
T  38697202 caaaatgtaaattgataattatttaaggga 38697173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 31844516 - 31844403
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgg 99  Q
    ||||||||||||||||| ||||||  |  |||||||||||||||||||||  ||||||||||| |||| ||||||||||||| |||||||| | ||| ||    
T  31844516 aaatcaaaaattttagaaattaaaggacaaacggaggggaccaaattgactaacggagcaaaa-caagagggaccaaaatgttaattttacgagttacgg 31844418  T
Q  100 gaccaaaatgtaaac 114  Q
    ||| |||||| ||||    
T  31844417 gactaaaatgaaaac 31844403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 28291401 - 28291464
Alignment:
Q  69 gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttagggga 132  Q
    |||||| |||||| |||||||| | ||||||||||||| || ||||| ||||||||||||||||    
T  28291401 gggaccgaaatgttaattttacgagttatgggaccaaagtgaaaactgataattatttagggga 28291464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 28291375 - 28291312
Alignment:
Q  69 gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttagggga 132  Q
    |||||| ||||||  ||||||| | |||||||||||||||| ||||| ||||||| ||||||||    
T  28291375 gggaccgaaatgttgattttacgaattatgggaccaaaatgaaaactgataattacttagggga 28291312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 16362562 - 16362520
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaa 45  Q
    ||||||||| ||||||||||||||| |||||||| ||||||||    
T  16362562 atcaaaaatattagacattaaaaaactaacggagaggaccaaa 16362520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 38697964 - 38697904
Alignment:
Q  53 acggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaa 113  Q
    ||||||||||| |||| |||||||||||||  ||||||||| |||||| |||||||||||||    
T  38697964 acggagcaaaa-caagagggaccaaaatgttgattttacaagttatggaaccaaaatgtaaa 38697904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 7040 - 6916
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggac 102  Q
    |||||||| |||||| ||| ||||| |||||||||| | ||| |||||||||||||||||| ||| || ||||||||||   ||||||||||||||||||    
T  7040 atcaaaaaatttagatattgaaaaactaacggaggg-atcaatttgaccgacggagcaaaaccaaaggaaccaaaatgttggttttacaatttatgggac 6942  T
Q  103 caaaatgtaaactcataattatttag 128  Q
    |||||||||||| |||||||||||||    
T  6941 caaaatgtaaacacataattatttag 6916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 8226 - 8289
Alignment:
Q  69 gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttagggga 132  Q
    |||||||||||||  ||||||| | |||||||||||||||||||||  | ||||| ||||||||    
T  8226 gggaccaaaatgttgattttacgagttatgggaccaaaatgtaaacaaagaattacttagggga 8289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 11722889 - 11722787
Alignment:
Q  46 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggggatcatttgtgcaat 145  Q
    ||||| |||||||||||| |||| |||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||| ||||||  ||| ||||    
T  11722889 ttgactgacggagcaaaaccaagaggaccaaaatgtgagttttacaatttatgggatcaaaatgtaaacacataattatttagaggatcaaatgtccaat 11722790  T
Q  146 taa 148  Q
    |||    
T  11722789 taa 11722787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 21777497 - 21777570
Alignment:
Q  46 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcata 119  Q
    ||||| |||||| ||||| |||| ||||  || ||||| |||||||| ||||||||||||||||||||||||||    
T  21777497 ttgactgacggaccaaaaccaagaggactcaactgtgagttttacaacttatgggaccaaaatgtaaactcata 21777570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 138176 - 138229
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacgg 56  Q
    |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||    
T  138176 atcaaaaagtttagacattaaaaaaataacggaggggatcaatttgaccaacgg 138229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 146197 - 146250
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaattgaccgacgg 56  Q
    |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||    
T  146197 atcaaaaagtttagacattaaaaaaataacggaggggatcaatttgaccaacgg 146250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18242278 - 18242326
Alignment:
Q  1 aaatcaaaaattttagacattaaaaaattaacggaggggaccaaattga 49  Q
    |||| |||||||| ||||||||||||| ||||||||||||| |||||||    
T  18242278 aaattaaaaatttaagacattaaaaaactaacggaggggacgaaattga 18242326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11849 - 11807
Alignment:
Q  3 atcaaaaattttagacattaaaaaattaacggaggggaccaaa 45  Q
    ||||||||| ||||||||||||||| |||||||| ||||||||    
T  11849 atcaaaaatattagacattaaaaaactaacggagaggaccaaa 11807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University