View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11568_low_4 (Length: 294)
Name: NF11568_low_4
Description: NF11568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11568_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 72 - 260
Target Start/End: Original strand, 27489090 - 27489278
Alignment:
| Q |
72 |
ttgtgatgaggaacggagggagtaatagtataaatgtgttgagaggtgttaacaaatttcaccgagacgaatcatcggctaccacaacaacacagagagg |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27489090 |
ttgtgatgaggaacggagggagtaatagtataaatgtgttgagaggtgttaacaaatttcaccgagacgaatcatcggctaccacaacaacacagagagg |
27489189 |
T |
|
| Q |
172 |
caacagctctcaaaacaaccttaactctctgagtgtggagcctcgtacttaaactaacgactaatgagtgtgtaaggctcagattcacc |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
27489190 |
caacagctctcaaaacaaccttaactctctgagtgtggagcctcatacttaaactaatgacaaatgagtgtgtaaggctcagattcacc |
27489278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 75 - 294
Target Start/End: Original strand, 27485632 - 27485851
Alignment:
| Q |
75 |
tgatgaggaacggagggagtaatagtataaatgtgttgagaggtgttaacaaatttcaccgagacgaatcatcggctaccacaacaacacagagaggcaa |
174 |
Q |
| |
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||||||||||| |||| |||||||||||| |||||||||||| |||| | |||||| || ||||||| ||||||||||||||| |||||||||| ||||| |
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| T |
27485632 |
tgatgaggaacagaggaagtaatagtatatatgtgttgagagctgtttataaatttgactgagacgagtcatcggctaccacagcaacacagaggggcaa |
27485731 |
T |
|
| Q |
175 |
cagctctcaaaacaaccttaactctctgagtgtggagcctcgtacttaaactaacgactaatgagtgtgtaaggctcagattcaccnnnnnnnctcaaac |
274 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
27485732 |
cagctctcaaaacaaccttaactctgtgagtgtggagcctcatacttaaactaacgacaaatgagtgtgtaaggctcagattcacctttttttctcaaac |
27485831 |
T |
|
| Q |
275 |
aataggccgacaagaagagc |
294 |
Q |
| |
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|||||||||| |||||||| |
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| T |
27485832 |
aataggccgaagagaagagc |
27485851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 138 - 257
Target Start/End: Original strand, 27456309 - 27456428
Alignment:
| Q |
138 |
acgaatcatcggctaccacaacaacacagagaggcaacagctctcaaaacaaccttaactctctgagtgtggagcctcgtacttaaactaacgactaatg |
237 |
Q |
| |
|
||||||||||||||||||| |||||| |||| || |||| ||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| |||| |
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| T |
27456309 |
acgaatcatcggctaccacgacaacaaagaggggaaacaactctcaaaacaaccttaactctctgggtgtgatgcctcgtacttaaactaatgacaaatg |
27456408 |
T |
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| Q |
238 |
agtgtgtaaggctcagattc |
257 |
Q |
| |
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|||||||||||||||||||| |
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| T |
27456409 |
agtgtgtaaggctcagattc |
27456428 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 240
Target Start/End: Original strand, 27458055 - 27458184
Alignment:
| Q |
114 |
gaggtgttaacaaatttcaccgagacgaatcatcggctaccacaacaacacagagaggcaacagctctcaaaacaaccttaactctctgagt---gtgga |
210 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||| |||||||| || ||||||||||||||||| ||||||||| |||||| ||| ||| | ||||| |
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| T |
27458055 |
gaggtgttaaaaaatttctccgagacgaatcattggctaccataataacacagagaggcaacaactctcaaaaaaaccttttatctgtgaatgtggtgga |
27458154 |
T |
|
| Q |
211 |
gcctcgtacttaaactaacgactaatgagt |
240 |
Q |
| |
|
||||| |||||||||||| || |||||||| |
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|
| T |
27458155 |
gcctcatacttaaactaatgattaatgagt |
27458184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 240
Target Start/End: Original strand, 27459987 - 27460120
Alignment:
| Q |
106 |
tgtgttgagaggtgttaacaaatttcaccg-agacgaatcatcggctaccacaacaacacagagaggcaacagctctcaaaacaaccttaactctctgag |
204 |
Q |
| |
|
||||||||||| |||||||||| ||| ||| ||||||||||| ||| |||||| |||||| || | |||| |||||||||||||||| ||| ||| |
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| T |
27459987 |
tgtgttgagagatgttaacaaaattctccggagacgaatcattggcaaccacattaacacaaag--gtaacatttctcaaaacaaccttatatctgtgaa |
27460084 |
T |
|
| Q |
205 |
tgtggagcctcgtacttaaactaacgactaatgagt |
240 |
Q |
| |
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||| ||||||| ||||||||||||||| |||||||| |
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| T |
27460085 |
tgtagagcctcatacttaaactaacgattaatgagt |
27460120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 27483182 - 27483265
Alignment:
| Q |
125 |
aaatttcaccgagacgaatcatcggctaccacaacaacacagagaggcaacagctctcaaaacaaccttaactctctgagtgtg |
208 |
Q |
| |
|
||||||||| |||||| ||||||||| |||||| |||||| || |||||||| ||||||||||||||||| ||||||| |||| |
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| T |
27483182 |
aaatttcactgagacggatcatcggcaaccacagcaacacggaaaggcaacaactctcaaaacaaccttatttctctgactgtg |
27483265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 229
Target Start/End: Original strand, 27480234 - 27480337
Alignment:
| Q |
124 |
caaatttcaccgagacgaatcatcggctaccacaacaacacagagaggcaacagctctcaaaacaaccttaactctctgagtgtggagcctcgtacttaa |
223 |
Q |
| |
|
|||| |||||||||| | |||||||||| |||| |||| ||||| ||||||| | ||||| ||||||||| ||||||||||||||||||| ||||| | |
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| T |
27480234 |
caaagttcaccgagaaggatcatcggcttgcacagcaactcagagcggcaacaacactcaagacaacctta--tctctgagtgtggagcctcatacttga |
27480331 |
T |
|
| Q |
224 |
actaac |
229 |
Q |
| |
|
|||||| |
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|
| T |
27480332 |
actaac |
27480337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 27451444 - 27451492
Alignment:
| Q |
198 |
ctctgagtgtggagcctcgtacttaaactaacgactaatgagtgtgtaa |
246 |
Q |
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|
|||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
27451444 |
ctctgagtgtggagcctcatacttaatctaacgactaatgagtgtgtaa |
27451492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27489031 - 27489068
Alignment:
| Q |
1 |
agaagaattattcattccatttccattgttgtttatta |
38 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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|
| T |
27489031 |
agaagaattattcattccatttccattgttgtttatta |
27489068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 27449337 - 27449394
Alignment:
| Q |
171 |
gcaacagctctcaaaacaaccttaactctctgagtgtggagcctcgtacttaaactaac |
229 |
Q |
| |
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|||| ||||||||| |||||||| ||||||||||||| ||||||| ||||||||||||| |
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|
| T |
27449337 |
gcaaaagctctcaagacaaccttgactctctgagtgt-gagcctcatacttaaactaac |
27449394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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