View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11568_low_5 (Length: 263)
Name: NF11568_low_5
Description: NF11568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11568_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 30825550 - 30825315
Alignment:
| Q |
17 |
ctttattatccctattgtaggataaattttggcactttaaaaaaggnnnnnnngtatataattcaatagaagtttgagaataagagcaattataggccct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30825550 |
ctttattatccctattgtaggataaattttggcactttaaaaaaggtttttt-gtatataattcaatagaagtttgagaataagagcaattataggccct |
30825452 |
T |
|
| Q |
117 |
gcctatgtttaatagtttttcttttaaaagtgttgtcataggatgtatctttaatagcgcttaccttacaaagtgctattaaaatgccac-nnnnnnnna |
215 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
30825451 |
----atgtttaatagtttttcttttaaaagcattgtcataggatgtatctttaatagcgcttaccttacaaagtgatattaaaatgccacttttttttta |
30825356 |
T |
|
| Q |
216 |
ttaatgtagtttgcaacccaaatgcagtcatattcttctca |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30825355 |
ttaatgtagtttgcaacccaaatgcagtcatattcttctca |
30825315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University