View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11569_high_2 (Length: 414)

Name: NF11569_high_2
Description: NF11569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11569_high_2
NF11569_high_2
[»] chr7 (1 HSPs)
chr7 (16-413)||(322101-322498)
[»] chr8 (2 HSPs)
chr8 (87-413)||(18295365-18295688)
chr8 (39-87)||(18295297-18295345)
[»] chr6 (3 HSPs)
chr6 (226-410)||(32687273-32687457)
chr6 (222-410)||(19810982-19811170)
chr6 (250-318)||(14767476-14767544)
[»] chr4 (3 HSPs)
chr4 (87-207)||(47851125-47851239)
chr4 (32-87)||(47851050-47851105)
chr4 (250-326)||(47851236-47851312)
[»] chr3 (1 HSPs)
chr3 (222-410)||(1199457-1199645)
[»] chr1 (1 HSPs)
chr1 (226-318)||(26941923-26942015)
[»] chr2 (1 HSPs)
chr2 (222-269)||(25207812-25207859)


Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Complemental strand, 322498 - 322101
Alignment:
Q  16 cagtacttaggggatttatatggagtagtagtagtaatattgattgaaatcagcaataaaagtatgaaagctttcataaatccattcaaatgtcataacg 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  322498 cagtacttaggggatttatatggaatagtagtagtaatattgattgaaatcagcaataaaagtatgaaagctttcataaatccattcaaatgtcataacg 322399  T
Q  116 accaagtacataggttcataaggaccaactacataggtttatattcaacatcttaaaacataaaattcaaaacaatatacagacatcactcatgctgtga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  322398 accaagtacataggttcataaggaccaactacataggtttatattcaacatcttaaaacataaaattcaaaacaatatacagacatcactcatgctgtga 322299  T
Q  216 actataatattgcctgacatttctccgcttacgcctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  322298 actataatattgcctgacatttctccgcttacgcctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaa 322199  T
Q  316 ggattgtctgcatacttgggattctgttcaattgaattaatttccaaggcactgatcctgcagatgacagacaatgactcaacaccatgttcctcctc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  322198 ggattgtctgcatacttgggattctgttcaattgaattaatttccaaggcactgatcctgcagatgacagacaatgactcaacaccatgttcctcctc 322101  T

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Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 87 - 413
Target Start/End: Original strand, 18295365 - 18295688
Alignment:
Q  87 tttcataaatccattcaaatgtcataacgaccaagtacataggttcataaggaccaactacataggtttatattcaacatcttaaaacataaaattcaaa 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| |||||||||| |||||    
T  18295365 tttcataaatccattcaaatgtcataacgaccaagtacataggttcataaggaccaactacataggttcatatccaacttcttcaaacataaaactcaaa 18295464  T
Q  187 acaatatacagacatcactcatgctgtgaactataatattgcctgacatttctccgcttacgcctcaatgactggtactgagttgcagacatggcctgag 286  Q
    ||||||||||||||||||||| |||||||||||||   ||||||||| ||||||||||||||||||||||||| ||||||||| |||| | |||||||||    
T  18295465 acaatatacagacatcactcaggctgtgaactata---ttgcctgacctttctccgcttacgcctcaatgacttgtactgagtcgcaggcgtggcctgag 18295561  T
Q  287 ctacaatctgttccatagccatgtataaaggattgtctgcatacttgggattctgttcaattgaattaatttccaaggcactgatcctgcagatgacaga 386  Q
    |||||||||||| ||||||||||||||||||| ||||||| ||||   ||||||||||||| ||||||||| ||| ||| ||||||||||||||||||||    
T  18295562 ctacaatctgtttcatagccatgtataaaggagtgtctgcgtactcctgattctgttcaatggaattaattgccagggccctgatcctgcagatgacaga 18295661  T
Q  387 caatgactcaacaccatgttcctcctc 413  Q
    ||||| |||||||||||||||||||||    
T  18295662 caatggctcaacaccatgttcctcctc 18295688  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 18295297 - 18295345
Alignment:
Q  39 agtagtagtagtaatattgattgaaatcagcaataaaagtatgaaagct 87  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  18295297 agtagtagtagtaatattgatttaaatcagcaacaaaagtatgaaagct 18295345  T

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Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 226 - 410
Target Start/End: Original strand, 32687273 - 32687457
Alignment:
Q  226 tgcctgacatttctccgcttacgcctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaaggattgtctg 325  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||| | |||| ||||||| |||||| |||||||| |||||||||||| |  |||    
T  32687273 tgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggcatgagctataatctgctccatagcaatgtataaaggagtacctg 32687372  T
Q  326 catacttgggattctgttcaattgaattaatttccaaggcactgatcctgcagatgacagacaatgactcaacaccatgttcctc 410  Q
    ||  ||  | |||||||||||| ||| ||||| ||| | |  |||| ||||| ||| ||| |||||  |||||||||||||||||    
T  32687373 caagctctgaattctgttcaatggaagtaattgccaggtccttgattctgcacatggcagtcaatggatcaacaccatgttcctc 32687457  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 222 - 410
Target Start/End: Original strand, 19810982 - 19811170
Alignment:
Q  222 atattgcctgacatttctccgcttacgcctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaaggattg 321  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||| | |||  ||||||| |||||| |||||||| |||||||||||| |     
T  19810982 atattgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggaatgagctataatctgctccatagcaatgtataaaggagta 19811081  T
Q  322 tctgcatacttgggattctgttcaattgaattaatttccaaggcactgatcctgcagatgacagacaatgactcaacaccatgttcctc 410  Q
     |||||  ||| | |||||||||||| |||  |||| |||   |  |||| ||||| ||| ||| |||||  |||||||||||||||||    
T  19811082 cctgcaagcttcgaattctgttcaatggaagcaattgccagatctttgattctgcacatggcagtcaatggatcaacaccatgttcctc 19811170  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 14767476 - 14767544
Alignment:
Q  250 ctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaagga 318  Q
    |||||||||  ||||||||| |||   || ||||||||||||||||  |||||| ||||||||||||||    
T  14767476 ctcaatgacaagtactgagtggcaagtatagcctgagctacaatctcctccatatccatgtataaagga 14767544  T

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Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 87 - 207
Target Start/End: Original strand, 47851125 - 47851239
Alignment:
Q  87 tttcataaatccattcaaatgtcataacgaccaagtacataggttcataaggaccaactacataggtttatattcaacatcttaaaacataaaattcaaa 186  Q
    ||||||||||||||||||||||||||    |||||||||||||||||||||||||||| ||||||||| |||| |||  ||||||||||||||| ||  |    
T  47851125 tttcataaatccattcaaatgtcata----ccaagtacataggttcataaggaccaaccacataggttcatatccaaattcttaaaacataaaactc--a 47851218  T
Q  187 acaatatacagacatcactca 207  Q
    |||||||||||||||||||||    
T  47851219 acaatatacagacatcactca 47851239  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 47851050 - 47851105
Alignment:
Q  32 tatatggagtagtagtagtaatattgattgaaatcagcaataaaagtatgaaagct 87  Q
    |||||||| |||||| ||||||||||||||||||| | || |||||||||||||||    
T  47851050 tatatggaatagtagcagtaatattgattgaaatctggaacaaaagtatgaaagct 47851105  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 47851236 - 47851312
Alignment:
Q  250 ctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaaggattgtctgc 326  Q
    |||| ||||||||||||| | |||| | |||| |  ||||||||| ||| |||||||||||||||  ||||||||||    
T  47851236 ctcagtgactggtactgaatcgcaggcgtggcataggctacaatcagtttcatagccatgtataagtgattgtctgc 47851312  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 222 - 410
Target Start/End: Original strand, 1199457 - 1199645
Alignment:
Q  222 atattgcctgacatttctccgcttacgcctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaaggattg 321  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||| | |||| ||||||| |||||| |||||| | |||||||||||| |     
T  1199457 atattgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggcatgagctataatctgctccataacaatgtataaaggagta 1199556  T
Q  322 tctgcatacttgggattctgttcaattgaattaatttccaaggcactgatcctgcagatgacagacaatgactcaacaccatgttcctc 410  Q
     |||||  ||| | |||||||||||| |||  |||| |||   |  |||| ||||| ||| ||| |||||  |||||||||||||||||    
T  1199557 cctgcaagcttcgaattctgttcaatggaagcaattgccagatctttgattctgcacatggcagtcaatggatcaacaccatgttcctc 1199645  T

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Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 226 - 318
Target Start/End: Complemental strand, 26942015 - 26941923
Alignment:
Q  226 tgcctgacatttctccgcttacgcctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaagga 318  Q
    |||||||||||||||||||||||| |||| |||||||||||||| | || | |||| ||||||| |||| | |||||||| ||||||||||||    
T  26942015 tgcctgacatttctccgcttacgcatcaacgactggtactgagtggtaggcgtggcatgagctataatccgctccatagcaatgtataaagga 26941923  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 25207859 - 25207812
Alignment:
Q  222 atattgcctgacatttctccgcttacgcctcaatgactggtactgagt 269  Q
    |||||||||||||||||||||||||||| |||| ||||| ||||||||    
T  25207859 atattgcctgacatttctccgcttacgcttcaacgactgatactgagt 25207812  T

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