View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11569_low_3 (Length: 386)

Name: NF11569_low_3
Description: NF11569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11569_low_3
NF11569_low_3
[»] chr2 (2 HSPs)
chr2 (17-373)||(9645211-9645567)
chr2 (190-230)||(11530030-11530070)
[»] chr6 (1 HSPs)
chr6 (291-331)||(27616047-27616087)
[»] chr5 (1 HSPs)
chr5 (265-328)||(40213811-40213874)
[»] chr4 (3 HSPs)
chr4 (241-328)||(13485360-13485447)
chr4 (292-328)||(8474833-8474869)
chr4 (290-334)||(8703089-8703133)
[»] chr1 (1 HSPs)
chr1 (265-328)||(7210568-7210631)
[»] chr8 (2 HSPs)
chr8 (290-328)||(26481003-26481041)
chr8 (267-328)||(14928151-14928212)


Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 373
Target Start/End: Complemental strand, 9645567 - 9645211
Alignment:
Q  17 attttattgatgcaacttccttctctctagcagctatttctcttttcannnnnnnccattctacttccatagcctttgtcaatgcatcaactttctttgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  9645567 attttattgatgcaacttccttctctctagcagctatttctcttttcatttttttccattctacttccatagcctttgtcaatgcatcaactttctttgt 9645468  T
Q  117 gagcatctgaaaagaatatctcttatctttagttctatgtaacaaaagggagatatgacaaaacaatgttacgatttcaacaaatcactattgctttgcg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9645467 gagcatctgaaaagaatatctcttatctttagttctatgtaacaaaagggagatatgacaaaacaatgttacgatttcaacaaatcactattgctttgcg 9645368  T
Q  217 atacactatttagtnnnnnnngaagtcaaataacggttatagcagtgatatagcattgttgcgtagaaaaatatgaacaaaccactattttctacgatct 316  Q
    ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9645367 atacactatttagtaaaaaaagaagtcaaataacggttatagcagtgatatagcattgttgcgtagaaaaatatgaacaaaccactattttctacgatct 9645268  T
Q  317 gtgattgacaacgctgatacgaggatagttgttaccagtacctttatttcttcatct 373  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9645267 gcgattgacaacgctgatacgaggatagttgttaccagtacctttatttcttcatct 9645211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 11530030 - 11530070
Alignment:
Q  190 atttcaacaaatcactattgctttgcgatacactatttagt 230  Q
    |||| ||||||||||||||| | ||||||||||||||||||    
T  11530030 atttgaacaaatcactattgttctgcgatacactatttagt 11530070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 27616087 - 27616047
Alignment:
Q  291 gaacaaaccactattttctacgatctgtgattgacaacgct 331  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  27616087 gaacaaaccactattttctgcgatctgcgattgacaacgct 27616047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 40213874 - 40213811
Alignment:
Q  265 tatagcattgttgcgtagaaaaatatgaacaaaccactattttctacgatctgtgattgacaac 328  Q
    ||||||| |||||||||| ||||| | ||||||||||||||||| || || || ||||||||||    
T  40213874 tatagcactgttgcgtagcaaaatttaaacaaaccactattttccacaatatgcgattgacaac 40213811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 328
Target Start/End: Original strand, 13485360 - 13485447
Alignment:
Q  241 gtcaaataacggttatagcagtgatatagcattgttgcgtagaaaaatatgaacaaaccactattttctacgatctgtgattgacaac 328  Q
    ||||||||| ||||||||||| | || |||| | | || ||| ||||| |||||||||| || |||||  ||||||||||||||||||    
T  13485360 gtcaaataatggttatagcagcgctaaagcactatagcataggaaaatttgaacaaaccgctgttttccgcgatctgtgattgacaac 13485447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 8474833 - 8474869
Alignment:
Q  292 aacaaaccactattttctacgatctgtgattgacaac 328  Q
    ||||||||||||||||| | |||||||||||||||||    
T  8474833 aacaaaccactattttccatgatctgtgattgacaac 8474869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 8703133 - 8703089
Alignment:
Q  290 tgaacaaaccactattttctacgatctgtgattgacaacgctgat 334  Q
    ||||||||| |||||||||| |||| ||||||||||||| |||||    
T  8703133 tgaacaaacgactattttctgcgatatgtgattgacaacactgat 8703089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 7210631 - 7210568
Alignment:
Q  265 tatagcattgttgcgtagaaaaatatgaacaaaccactattttctacgatctgtgattgacaac 328  Q
    ||||||||||||||||||  |||| ||| ||||||||||||||| || |||||  |||||||||    
T  7210631 tatagcattgttgcgtagtgaaatttgagcaaaccactattttccacaatctgcaattgacaac 7210568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 26481041 - 26481003
Alignment:
Q  290 tgaacaaaccactattttctacgatctgtgattgacaac 328  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  26481041 tgaacaaaccgctattttctgcgatctgtgattgacaac 26481003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 328
Target Start/End: Complemental strand, 14928212 - 14928151
Alignment:
Q  267 tagcattgttgcgtagaaaaatatgaacaaaccactattttctacgatctgtgattgacaac 328  Q
    ||||| |||||| ||| ||||| ||||||| |||||||||||| |||||||  |||||||||    
T  14928212 tagcactgttgcatagcaaaatttgaacaacccactattttctgcgatctgcaattgacaac 14928151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University