View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11569_low_4 (Length: 355)
Name: NF11569_low_4
Description: NF11569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11569_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 111 - 342
Target Start/End: Original strand, 2047206 - 2047437
Alignment:
| Q |
111 |
tatcatgcttgtttttgtataaagttttgacaatcatgttaactctaaactgttataccttatttgcagcgtttttgtaaccttatgtttgatggtgcat |
210 |
Q |
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| T |
2047206 |
tatcatgcttgtttttgtataaagttttgacaatcatgttaactctaaactgttataccttatttgcagcgtttttgtaaccttatgtttgatggtgcat |
2047305 |
T |
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| Q |
211 |
caagtgggaatccgggaccagctggtgcaggagctgtactatatgatgaagattggtgtctggtatcaaatttttgcaacaactcaattgggtattatat |
310 |
Q |
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| T |
2047306 |
caagtgggaatccgggaccagctggtgcaggagctgtactatatgatgaagattggtgtctggtattaaatttttgcaacaattcaattgggtattatat |
2047405 |
T |
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| Q |
311 |
tgttgatttataaaatattgtagccaactcct |
342 |
Q |
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| T |
2047406 |
tgttgatttataaaatattgtagccaactcct |
2047437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 288
Target Start/End: Original strand, 2062311 - 2062476
Alignment:
| Q |
125 |
ttgtataaagttttgacaatcatgt--taactctaaactgttataccttatttgcagcgtttttgtaaccttatgtttgatggtgcatcaagtgggaatc |
222 |
Q |
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| T |
2062311 |
ttgtataaagttttgacaatcatatattaactccaaagttctatatcttatttgcagggtttgtgtatcgttcggtttgatggtgcatcaggtggaaatc |
2062410 |
T |
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| Q |
223 |
cgggaccagctggtgcaggagctgtactatatgatgaagattggtgtctggtatcaaatttttgca |
288 |
Q |
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| T |
2062411 |
ctggaccagctggtgcaggagctgttctgtatgcggaagatgggagactggtatcaaatttatgca |
2062476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 149 - 334
Target Start/End: Original strand, 2053800 - 2053990
Alignment:
| Q |
149 |
ttaactctaaactgttataccttatttgcagcgtttttgtaaccttatgtttgatggtgcatcaagtgggaatccgggaccagctggtgcaggagctgta |
248 |
Q |
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| T |
2053800 |
ttaactctaaagttttataccttatttgtagcgttcttgtatcctcgagtttgatggtgcatcgattggaaatcctggaccagctggtgcaggagctatt |
2053899 |
T |
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| Q |
249 |
ctatatgatgaagattggtgtctggtatcaaatttttgcaacaactcaattgg-----gtattatattgttgatttataaaatattgtagc |
334 |
Q |
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| T |
2053900 |
ctgtatgcggaagatgggagaccggtatcaaatttattcaacagttcaattggttttaattttatatttttgatttataaaatattgtagc |
2053990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 311
Target Start/End: Original strand, 2106197 - 2106338
Alignment:
| Q |
170 |
ttatttgcagcgtttttgtaaccttatgtttgatggtgcatcaagtgggaatccgggaccagctggtgcaggagctgtactatatgatgaagattggtgt |
269 |
Q |
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| T |
2106197 |
ttatttgcagctttcttgtatccttgagtttgatggtgcagccagtgggaatcccggaccagctggtgccggagctatactgcgttctgaagatgggagt |
2106296 |
T |
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| Q |
270 |
ctggtatcaaatttttgcaacaactcaattgggtattatatt |
311 |
Q |
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| T |
2106297 |
ctggtatctactttgtgcaacaattcatttggacattatatt |
2106338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 125 - 243
Target Start/End: Original strand, 2057885 - 2058005
Alignment:
| Q |
125 |
ttgtataaagttttgacaatcat--gttaactctaaactgttataccttatttgcagcgtttttgtaaccttatgtttgatggtgcatcaagtgggaatc |
222 |
Q |
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| T |
2057885 |
ttgtataaagttttgacaatcataggttaacttcaaagtgctatatcttatttgcagggtttgtgtatcgttcggtttggtggtgtatcgagtggaaatc |
2057984 |
T |
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| Q |
223 |
cgggaccagctggtgcaggag |
243 |
Q |
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| T |
2057985 |
ctggaccagctggggcaggag |
2058005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 299
Target Start/End: Original strand, 2041685 - 2041866
Alignment:
| Q |
125 |
ttgtataaagttttgacaatcat-------gttaactctaaactgttataccttatttgcagcgtttttgtaaccttatgtttgatggtgcatcaagtgg |
217 |
Q |
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| T |
2041685 |
ttgtataaagttttgacaatcatatgttatgttaactccaaaattttaaatcttatttgcagagttcttgtatccttcaatttgatggtgcgtcaagtgg |
2041784 |
T |
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| Q |
218 |
gaatccgggaccagctggtgcaggagctgtactatatgatgaagattggtgtctggtatcaaatttttgcaacaactcaatt |
299 |
Q |
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| T |
2041785 |
aaatcctggatcagctggtgcaagagctatattgtttgttgaaaatggaagtctggtatcaagtttatacaacaattcaatt |
2041866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 2097710 - 2097790
Alignment:
| Q |
170 |
ttatttgcagcgtttttgtaaccttatgtttgatggtgcatcaagtgggaatccgggaccagctggtgcaggagctgtact |
250 |
Q |
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| T |
2097710 |
ttatttgcagctttcttgtatccttgagtttgatggtgcagccagcgggaatcccggaccagctggtgccggagctatact |
2097790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 2088190 - 2088243
Alignment:
| Q |
197 |
gtttgatggtgcatcaagtgggaatccgggaccagctggtgcaggagctgtact |
250 |
Q |
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| T |
2088190 |
gtttgatggcgcatcgcgtggaaatcccggaccagctggtgcaggagctatact |
2088243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 2047149 - 2047177
Alignment:
| Q |
1 |
atgttaatttgtttcttatctctgttact |
29 |
Q |
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| T |
2047149 |
atgttaatttgtttcttatctctgttact |
2047177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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