View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11569_low_6 (Length: 313)
Name: NF11569_low_6
Description: NF11569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11569_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 15 - 294
Target Start/End: Complemental strand, 572161 - 571880
Alignment:
| Q |
15 |
caaaggcgggaatattggcgccactgttatgaaggaatgttatttaattttctgtcacaattgatatattaattattaattttaatgnnnnnnnn--tct |
112 |
Q |
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| T |
572161 |
caaaggcgggaatattggtgccactgttatgacggaatgttatttaattttctgtcacaattgatatattaattattaatttaaatgaaaaaaaaaatct |
572062 |
T |
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| Q |
113 |
tttaagaaaaaagtatcggaaaactcaataccaattcattcaacttnnnnnnnnnnnnnnnnnnnnnnnccattgaaaccctaatatcccaaacttacat |
212 |
Q |
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| T |
572061 |
tttaagaaaaaagtatcggaaaactcaataccaattcattcaactttctctctctcgttcatctctctcccattgaaaccctaatatcccaaacttacat |
571962 |
T |
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| Q |
213 |
ctcactctttcgatctactccactgaaggctctcttgtctccatcgctaactccttctcatctctgacaacatcgttccctt |
294 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| |
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| T |
571961 |
ctcactctctcgatctactccactgaaggctctcttgtctccatcgctaactccttctcaactcgggcaacatcgttccctt |
571880 |
T |
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