View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11569_low_7 (Length: 301)
Name: NF11569_low_7
Description: NF11569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11569_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 8e-61; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 168 - 286
Target Start/End: Original strand, 17943991 - 17944109
Alignment:
| Q |
168 |
tatatgttggtgtggctcagtgcaaagaagacaggaaagctcaattgcaggtttagcctgtcttttatcttgcatatatattatttaattaacttaacct |
267 |
Q |
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| T |
17943991 |
tatatgttggtgtggctcagtgcaaagaagacaggaaagctcaattgcaggtttagcctgtcttttatcttgcatatatattatttaattaacttaacct |
17944090 |
T |
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| Q |
268 |
aggctcctctcgtgtttct |
286 |
Q |
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| T |
17944091 |
aggctcctctcgtgtttct |
17944109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 17943842 - 17943969
Alignment:
| Q |
9 |
agcaaaggattcggttttgttgtcttttccactcctgaggaagcgagtaaagttgtatgtcatttgttcattcgtcaaaaaagatttcgcttaacgaaat |
108 |
Q |
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| T |
17943842 |
agcaagggattcggttttgttgccttttccactcgtgaggaagcgactaaagttgtatgtcatttgttcattcgtcaaaaaagatttcgcttaacgaaat |
17943941 |
T |
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| Q |
109 |
ataacccttttttaatcagctgcatgag |
136 |
Q |
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| T |
17943942 |
ataacccttttttaatcagctgcatgag |
17943969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 14396283 - 14396156
Alignment:
| Q |
9 |
agcaaaggattcggttttgttgtcttttccactcctgaggaagcgagtaaagttgtatgtcatttgttcattcgtcaaaaaagatttcgcttaacgaaat |
108 |
Q |
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| T |
14396283 |
agcaagggcttcggttttgttgcattttccacatcagaggaagcgagtaaagctgtatgtcatttcattatttgttaaaaaagattttgcttaaccaaat |
14396184 |
T |
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| Q |
109 |
ataacccttttttaatcagctgcatgag |
136 |
Q |
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| T |
14396183 |
ataaacctttttcaatcagctgcatgag |
14396156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 255
Target Start/End: Complemental strand, 14406020 - 14405933
Alignment:
| Q |
168 |
tatatgttggtgtggctcagtgcaaagaagacaggaaagctcaattgcaggtttagcctgtcttttatcttgcatatatattatttaa |
255 |
Q |
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| T |
14406020 |
tatatgtttctgtggcccaacgcaaagaagaaaggaaagctcaattgcaggtaaaacttgtcttttatcttgtaaatatattatttaa |
14405933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 14396085 - 14396003
Alignment:
| Q |
173 |
gttggtgtggctcagtgcaaagaagacaggaaagctcaattgcaggtttagcctgtcttttatcttgcatatatattatttaa |
255 |
Q |
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| T |
14396085 |
gttgttgtggctcaacgcaaagaagataggaaaactcgtttgcaggtttagcctatattttatcttgtatatttattatttaa |
14396003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 14406186 - 14406110
Alignment:
| Q |
19 |
tcggttttgttgtcttttccactcctgaggaagcgagtaaagttgtatgtcatttgttcattcgtcaaaaaagattt |
95 |
Q |
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|||||||||||| ||| |||| || ||||||||||| |||| |||||||| |||||| || || ||||||||||| |
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| T |
14406186 |
tcggttttgttgcttttaccacaccggaggaagcgagcaaagctgtatgtcgtttgttattttgttaaaaaagattt |
14406110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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