View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11569_low_9 (Length: 252)

Name: NF11569_low_9
Description: NF11569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11569_low_9
NF11569_low_9
[»] chr6 (15 HSPs)
chr6 (22-244)||(5358325-5358547)
chr6 (168-246)||(5422040-5422118)
chr6 (169-246)||(5070606-5070683)
chr6 (178-235)||(5077283-5077340)
chr6 (161-246)||(5107969-5108054)
chr6 (170-237)||(5394183-5394250)
chr6 (178-244)||(5092785-5092851)
chr6 (161-246)||(5429429-5429514)
chr6 (178-242)||(5160691-5160755)
chr6 (177-246)||(5149891-5149960)
chr6 (177-242)||(5340400-5340465)
chr6 (170-237)||(5185054-5185121)
chr6 (167-246)||(5366342-5366421)
chr6 (169-235)||(5272848-5272914)
chr6 (169-235)||(5443942-5444008)
[»] chr4 (6 HSPs)
chr4 (180-239)||(4332495-4332554)
chr4 (180-235)||(4356598-4356653)
chr4 (180-235)||(6749817-6749872)
chr4 (180-237)||(6625941-6625998)
chr4 (183-246)||(4129744-4129808)
chr4 (178-210)||(6592337-6592369)
[»] chr7 (1 HSPs)
chr7 (170-237)||(34719961-34720028)


Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 244
Target Start/End: Complemental strand, 5358547 - 5358325
Alignment:
Q  22 ttcacttcactctctcatagttttctgattcaacaaatagttagtttattctctttcactcgtctcatccatccatggtttcttccggtaactcctccca 121  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5358547 ttcacttcactctctcatagttttctgattcaacaaatagttagattattctctttcactcgtctcatccatccatggtttcttccggtgactcctccca 5358448  T
Q  122 acatgcccaattaattttgggtgatgaagattcaagagaaaccggcacaaggatccatgatgtgttcttgagtttcagaggagaggacactcgtgcatca 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |      
T  5358447 acatgcccaattaattttgggtgatgaagattcaagaaaaaccggcacaaggatccatgatgtgttcttgagtttcagaggagaggacactcatgcttgc 5358348  T
Q  222 ttcacttcacatctctctgcttc 244  Q
    |||||||||||||||| ||||||    
T  5358347 ttcacttcacatctctatgcttc 5358325  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 168 - 246
Target Start/End: Original strand, 5422040 - 5422118
Alignment:
Q  168 acaaggatccatgatgtgttcttgagtttcagaggagaggacactcgtgcatcattcacttcacatctctctgcttctc 246  Q
    ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  5422040 acaaggatccatgatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatctctatgcttctc 5422118  T

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Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 5070683 - 5070606
Alignment:
Q  169 caaggatccatgatgtgttcttgagtttcagaggagaggacactcgtgcatcattcacttcacatctctctgcttctc 246  Q
    |||||||||||||||||||||| |||||||||||||||||||||||  | ||||||||||||||||||| ||||||||    
T  5070683 caaggatccatgatgtgttcttaagtttcagaggagaggacactcgctcttcattcacttcacatctctatgcttctc 5070606  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 5077340 - 5077283
Alignment:
Q  178 atgatgtgttcttgagtttcagaggagaggacactcgtgcatcattcacttcacatct 235  Q
    ||||||||||||| ||||||||||||| ||||||||||| ||| ||||||||||||||    
T  5077340 atgatgtgttcttaagtttcagaggagtggacactcgtgaatctttcacttcacatct 5077283  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 5108054 - 5107969
Alignment:
Q  161 aaccggcacaaggatccatgatgtgttcttgagtttcagaggagaggacactcgtgcatcattcacttcacatctctctgcttctc 246  Q
    ||||| ||||||||||||||| |||||| | |||||||||||  | || |||||||| || |||||||||||||||| ||||||||    
T  5108054 aaccgacacaaggatccatgacgtgttcctaagtttcagaggcaaagatactcgtgcttccttcacttcacatctctatgcttctc 5107969  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 5394183 - 5394250
Alignment:
Q  170 aaggatccatgatgtgttcttgagtttcagaggagaggacactcgtgcatcattcacttcacatctct 237  Q
    |||||| || || |||||||| ||||||||||| |||||||||||| | |||||||||||||||||||    
T  5394183 aaggattcacgacgtgttcttaagtttcagaggggaggacactcgttcttcattcacttcacatctct 5394250  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 5092785 - 5092851
Alignment:
Q  178 atgatgtgttcttgagtttcagaggagaggacactcgtgcatcattcacttcacatctctctgcttc 244  Q
    |||| |||||||| ||||| |||||| | || |||||||||||||||||||||||||||| ||||||    
T  5092785 atgaagtgttcttaagttttagaggaaaagatactcgtgcatcattcacttcacatctctatgcttc 5092851  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 5429429 - 5429514
Alignment:
Q  161 aaccggcacaaggatccatgatgtgttcttgagtttcagaggagaggacactcgtgcatcattcacttcacatctctctgcttctc 246  Q
    ||||| ||||||||||||||| |||||| | ||||| ||||| || || ||||| | ||| |||||||||||||||| ||||||||    
T  5429429 aaccgacacaaggatccatgacgtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctc 5429514  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 5160755 - 5160691
Alignment:
Q  178 atgatgtgttcttgagtttcagaggagaggacactcgtgcatcattcacttcacatctctctgct 242  Q
    |||| |||||||| ||||| |||||| | || |||||||||||||||||||||||||||| ||||    
T  5160755 atgaagtgttcttaagttttagaggaaaagatactcgtgcatcattcacttcacatctctatgct 5160691  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 246
Target Start/End: Complemental strand, 5149960 - 5149891
Alignment:
Q  177 catgatgtgttcttgagtttcagaggagaggacactcgtgcatcattcacttcacatctctctgcttctc 246  Q
    ||||| |||||||| ||||| ||||| || || || || |||||||||||||||||||||| ||||||||    
T  5149960 catgaagtgttcttaagttttagaggggaagatacgcgcgcatcattcacttcacatctctatgcttctc 5149891  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 5340400 - 5340465
Alignment:
Q  177 catgatgtgttcttgagtttcagaggagaggacactcgtgcatcattcacttcacatctctctgct 242  Q
    ||||| ||||| |||||||| |||||  |||||||||||| ||| |||||||||||||||| ||||    
T  5340400 catgaagtgtttttgagttttagagggaaggacactcgtgtatccttcacttcacatctctatgct 5340465  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 5185121 - 5185054
Alignment:
Q  170 aaggatccatgatgtgttcttgagtttcagaggagaggacactcgtgcatcattcacttcacatctct 237  Q
    ||||||||||||||||||||| ||||| ||||| || || |||||| | || || |||||||||||||    
T  5185121 aaggatccatgatgtgttcttaagttttagaggggaagatactcgttcttcctttacttcacatctct 5185054  T

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Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 5366342 - 5366421
Alignment:
Q  167 cacaaggatccatgatgtgttcttgagtttcagaggagaggacactcgtgcatcattcacttcacatctctctgcttctc 246  Q
    |||| |||| |||||||||||| | ||||| || ||| |||| || |||||||| |||||||| ||||||| ||||||||    
T  5366342 cacatggatgcatgatgtgttcctaagttttagtggaaaggagacgcgtgcatctttcacttcgcatctctatgcttctc 5366421  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 5272848 - 5272914
Alignment:
Q  169 caaggatccatgatgtgttcttgagtttcagaggagaggacactcgtgcatcattcacttcacatct 235  Q
    |||||| | |||| |||||||| ||||||||||| |||||||| ||  | |||||||||||||||||    
T  5272848 caaggagctatgaagtgttcttaagtttcagaggcgaggacacgcgcacttcattcacttcacatct 5272914  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 5443942 - 5444008
Alignment:
Q  169 caaggatccatgatgtgttcttgagtttcagaggagaggacactcgtgcatcattcacttcacatct 235  Q
    ||||||||||||| |||||||| ||||| |||||  | || |||||||| || ||||||||||||||    
T  5443942 caaggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatct 5444008  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 4332495 - 4332554
Alignment:
Q  180 gatgtgttcttgagtttcagaggagaggacactcgtgcatcattcacttcacatctctct 239  Q
    ||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||    
T  4332495 gatgtgttcttgagttttagaggcgaagacactcgcgcatcattcacttcacatctctct 4332554  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 4356598 - 4356653
Alignment:
Q  180 gatgtgttcttgagtttcagaggagaggacactcgtgcatcattcacttcacatct 235  Q
    |||||||| |||||||| |||||||| |||||| | ||||||||||||||||||||    
T  4356598 gatgtgtttttgagttttagaggagaagacactagagcatcattcacttcacatct 4356653  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 6749817 - 6749872
Alignment:
Q  180 gatgtgttcttgagtttcagaggagaggacactcgtgcatcattcacttcacatct 235  Q
    |||||||||||||||||||||||||| |||| |||||||  ||||| |||||||||    
T  6749817 gatgtgttcttgagtttcagaggagacgacagtcgtgcaaaattcatttcacatct 6749872  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 6625998 - 6625941
Alignment:
Q  180 gatgtgttcttgagtttcagaggagaggacactcgtgcatcattcacttcacatctct 237  Q
    ||||||||||||||||||||||| || |||| |||||||   |||| |||||||||||    
T  6625998 gatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatctct 6625941  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 4129808 - 4129744
Alignment:
Q  183 gtgttcttgagtttcagaggagaggacactc-gtgcatcattcacttcacatctctctgcttctc 246  Q
    |||||||| ||||||||||| || || |||| |||||||||||| |||||||||| || ||||||    
T  4129808 gtgttcttaagtttcagaggtgatgatactcagtgcatcattcatttcacatctcacttcttctc 4129744  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 6592369 - 6592337
Alignment:
Q  178 atgatgtgttcttgagtttcagaggagaggaca 210  Q
    |||||||||||||||||||||||||||| ||||    
T  6592369 atgatgtgttcttgagtttcagaggagaagaca 6592337  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 34720028 - 34719961
Alignment:
Q  170 aaggatccatgatgtgttcttgagtttcagaggagaggacactcgtgcatcattcacttcacatctct 237  Q
    ||||||| ||||||||||||||||||||||||| || || |||||||||  ||||| |||||||||||    
T  34720028 aaggatctatgatgtgttcttgagtttcagaggggaagatactcgtgcaagattcatttcacatctct 34719961  T

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