View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1156_high_10 (Length: 277)
Name: NF1156_high_10
Description: NF1156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1156_high_10 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 30 - 277
Target Start/End: Complemental strand, 37859886 - 37859641
Alignment:
| Q |
30 |
tccctctcatggctttagtgtaaaaaatttacgcttatcactcgagatattaaacaagaaaactaggctaattgcttggaaggaagatgcaactaatgct |
129 |
Q |
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| T |
37859886 |
tccctctcatggctttagtgtaaaaaatttacgcttatcactcaagatattaaaaaagaaaactcggctaattgcttggaaggaagatgcaactaatgct |
37859787 |
T |
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| Q |
130 |
tatgttttcaatttcgatggtcgctctcgctcccaaaccaatccaggtatggcagcatttggtggtttgattaggaattccaacggtgattaccaatgtg |
229 |
Q |
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| T |
37859786 |
tatgttttcaatttcgatggtcgctctcgctcccaaaccaatccaggtatggcagc--gtggtggtttgattaggaattccaacggtgattacaaatgtg |
37859689 |
T |
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| Q |
230 |
gcttccacggtaatattggctattccattagcctccatgccgagatca |
277 |
Q |
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| T |
37859688 |
gcttccacggtaatattggctattccattagcctccatgccgagatca |
37859641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 30 - 277
Target Start/End: Complemental strand, 18102277 - 18102033
Alignment:
| Q |
30 |
tccctctcatggctttagtgtaaaaaatttacgcttatcactcgagatattaaacaagaaaactaggctaattgcttggaaggaagatgcaactaatgct |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
18102277 |
tccctctcatggctttagtgtaaaaaatttacgcttatcactcaagatattaaaaaagaaa-ctcggctaattgcttggaaggaagatgcaactaatgct |
18102179 |
T |
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| Q |
130 |
tatgttttcaatttcgatggtcgctctcgctcccaaaccaatccaggtatggcagcatttggtggtttgattaggaattccaacggtgattaccaatgtg |
229 |
Q |
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| T |
18102178 |
tatgttttcaatttcgatggtcgctctcgctcccaaaccaatccaggtatggcagc--gtggtggtttgattaggaattccaacggtgattacaaatgtg |
18102081 |
T |
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| Q |
230 |
gcttccacggtaatattggctattccattagcctccatgccgagatca |
277 |
Q |
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| T |
18102080 |
gcttccacggtaatattggctattccattagcctccatgccgagatca |
18102033 |
T |
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