View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1156_high_5 (Length: 398)
Name: NF1156_high_5
Description: NF1156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1156_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 349
Target Start/End: Complemental strand, 8401539 - 8401211
Alignment:
| Q |
10 |
attatactgacttggacacttggtggaaagagctctcaccatgaacaagataggaactaataaacaagacaagaccagcttgttgtatgatttatttgaa |
109 |
Q |
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| T |
8401539 |
attatactgacttggacacttggtggaaagagctctcaccttgaacaagataggaactaataaacaagacaagaccagcttgt----------atttgaa |
8401450 |
T |
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| Q |
110 |
caaacnnnnnnnnngaggaattgtttgaacaaacttgttgcacgaattgtagtttgtaaaatttttcttttcaactatcaacataaattacattttcata |
209 |
Q |
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| T |
8401449 |
caaacttttttt--gaggaattgtttgaacaaacttgttgcacgaattgtagtttgtaaaatttttcttttcaactatcaacatacattacattttcata |
8401352 |
T |
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| Q |
210 |
tacctattctctcgtatatctaggataaactttttctgtttt-tagaacgcgaagtcactaggcaatttacgtgattctaaagggatattttgttcgaag |
308 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8401351 |
tacctattctctcatatatctaggataaactttttctgttttatagaacgcgaagtcactaggcaatttacgtgattctaaagggatattttgttcgaag |
8401252 |
T |
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| Q |
309 |
tataaaaatgaatgaaattttctaattcaatgaataaattg |
349 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8401251 |
tataaaaatgagtgaaattttctaattcaatgaataaattg |
8401211 |
T |
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