View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1156_high_7 (Length: 285)
Name: NF1156_high_7
Description: NF1156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1156_high_7 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 18101716 - 18101986
Alignment:
| Q |
17 |
taaacaccagtcgtattcgtcgtgagtaatgaatgacgctcatccgatggatcaagaagagtcacataccactattcgattgtgctccaagcttggagaa |
116 |
Q |
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| T |
18101716 |
taaacacatgtcgtattcgtcgtgagtaatgaatgacgctcagccgatggatcaagaagagtcacataccactattcgattgtgctccaagcttggagaa |
18101815 |
T |
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| Q |
117 |
ataatcggtaaacatattacctttcctaagagtttgatgcactacaaaatcaatcattatcgatataannnnnnnnatcacc--agtctcattgccataa |
214 |
Q |
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| T |
18101816 |
ataatcggtaaacatattacctttcctaagagtgtgatgcactacaaaatcaatcattatcgatataattttttttatcaccgttgtctcattgccataa |
18101915 |
T |
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| Q |
215 |
tggagtttcgaaacattcgcaagctgcatcgggtggatagttgcaaagtgtcaatgtaatagataatattc |
285 |
Q |
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| T |
18101916 |
tggagtttcgaaacattcgcaagctgcattgggtggataattgcaaagtgtcaatgtaatagataatattc |
18101986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 37859324 - 37859594
Alignment:
| Q |
17 |
taaacaccagtcgtattcgtcgtgagtaatgaatgacgctcatccgatggatcaagaagagtcacataccactattcgattgtgctccaagcttggagaa |
116 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859324 |
taaacacatgtcgtattcgtcgtgagtaatgaatgacgctcagccgatggatcaagaagagtcacataccactattcgattgtgctccaagcttggagaa |
37859423 |
T |
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| Q |
117 |
ataatcggtaaacatattacctttcctaagagtttgatgcactacaaaatcaatcattatcgatataannnnnnnnatcacc--agtctcattgccataa |
214 |
Q |
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| T |
37859424 |
ataatcggtaaacatattacctttcctaagagtgtgatgcactacaaaatcaatcattatcgatataattttttttatcaccgttgtctcattgccataa |
37859523 |
T |
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| Q |
215 |
tggagtttcgaaacattcgcaagctgcatcgggtggatagttgcaaagtgtcaatgtaatagataatattc |
285 |
Q |
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| T |
37859524 |
tggagtttcgaaacattcgcaagctgcattgggtggataattgcaaagtgtcaatgtaatagataatattc |
37859594 |
T |
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