View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1156_high_9 (Length: 277)
Name: NF1156_high_9
Description: NF1156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1156_high_9 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 8401986 - 8401725
Alignment:
| Q |
11 |
cagagacgggttaatgattgtgatgtgggcgcttaggttctcatgttgttgagtgtataaatatgcttgaata-ccctcctcctttgagctagatggagg |
109 |
Q |
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| T |
8401986 |
cagagccgggttaatgattgcgatgtgggcgcttaggttctcaggttgtcgagtgtataaatatgcttgagtatccctcctcctttgagctagatggagg |
8401887 |
T |
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| Q |
110 |
taaccgaaaaaatatttaacaatatgatgaatgtaaccnnnnnnngatatttgatggacttgagttgtgtgttatcacacgtcgtctaattaagattgaa |
209 |
Q |
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| T |
8401886 |
taaccaaaaaaatatttaacaatatgatggatgtaaccaaaaaaagatatttgatggacttgagttgtgtgttatcacacgtcgtctaattaagattgaa |
8401787 |
T |
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| Q |
210 |
cataatcttaatcttaatcttaaaatcgttatttggaaaaactcgaattcaatttttggataaaatat |
277 |
Q |
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| T |
8401786 |
cataatct------taattttaaaattgttatttggaaaaactcgaattcaatttctgaataaaatat |
8401725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 8402109 - 8402025
Alignment:
| Q |
17 |
cgggttaatgattgtgatgtgggcgcttaggttctcatgttgttgagtgtataaatatgcttgaataccctcctcctttgagcta |
101 |
Q |
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| T |
8402109 |
cgggttaatgattgcgaagtgggcgctcaggttctcgggctgtcgagtgtataaatatgcttgagtaccctcctcctttgagcta |
8402025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 8402194 - 8402154
Alignment:
| Q |
61 |
gagtgtataaatatgcttgaataccctcctcctttgagcta |
101 |
Q |
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| T |
8402194 |
gagtgtataaatatgtttgagtaccctcctcctttgagcta |
8402154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 11047498 - 11047542
Alignment:
| Q |
57 |
tgttgagtgtataaatatgcttgaataccctcctcctttgagcta |
101 |
Q |
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| T |
11047498 |
tgttgagtgtataaatacgcttgagtaccctcatcctttgagcta |
11047542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 50196900 - 50196944
Alignment:
| Q |
57 |
tgttgagtgtataaatatgcttgaataccctcctcctttgagcta |
101 |
Q |
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| T |
50196900 |
tgttgagtgtataaatatgtttaaataccctcatcctttgagcta |
50196944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 20490915 - 20490962
Alignment:
| Q |
55 |
gttgttgagtgtataaatatgcttgaataccctcctcctttgagctag |
102 |
Q |
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| T |
20490915 |
gttgttgagtgtataaatatacttgagtaccctcgtcttttgagctag |
20490962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 25685731 - 25685778
Alignment:
| Q |
55 |
gttgttgagtgtataaatatgcttgaataccctcctcctttgagctag |
102 |
Q |
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| T |
25685731 |
gttgttgagtgtataaatatgtttgaatactctcatcatttgagctag |
25685778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 10645790 - 10645836
Alignment:
| Q |
55 |
gttgttgagtgtataaatatgcttgaataccctcctcctttgagcta |
101 |
Q |
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| T |
10645790 |
gttgttgagtgtataaatatgtttgagtaccctcatccttagagcta |
10645836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 53473628 - 53473586
Alignment:
| Q |
40 |
cgcttaggttctcatgttgttgagtgtataaatatgcttgaat |
82 |
Q |
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| T |
53473628 |
cgcttaggtttttatgttgttgagtgtataaatatacttgaat |
53473586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 16413056 - 16413004
Alignment:
| Q |
48 |
ttctcatgttgttgagtgtataaatatgcttgaataccctcctcctttgagct |
100 |
Q |
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| T |
16413056 |
ttctcaggatgttgagtgtataaatgtgcttggatatcctcatcctttgagct |
16413004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 43829886 - 43829842
Alignment:
| Q |
58 |
gttgagtgtataaatatgcttgaataccctcctcctttgagctag |
102 |
Q |
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| T |
43829886 |
gttgagtgtagaaatatgcttgagtaccctcatccattgagctag |
43829842 |
T |
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