View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1156_low_1 (Length: 709)

Name: NF1156_low_1
Description: NF1156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1156_low_1
NF1156_low_1
[»] chr7 (3 HSPs)
chr7 (243-648)||(39741956-39742364)
chr7 (243-358)||(48850726-48850840)
chr7 (243-313)||(20077342-20077412)
[»] chr4 (7 HSPs)
chr4 (242-648)||(6898414-6898823)
chr4 (243-312)||(12094856-12094925)
chr4 (246-313)||(9451245-9451312)
chr4 (243-313)||(24257703-24257773)
chr4 (260-358)||(7810064-7810162)
chr4 (242-308)||(4883589-4883655)
chr4 (243-309)||(27067874-27067940)
[»] chr3 (12 HSPs)
chr3 (242-358)||(15291460-15291575)
chr3 (243-313)||(1529165-1529236)
chr3 (142-225)||(11994628-11994711)
chr3 (242-313)||(52041384-52041455)
chr3 (241-313)||(1141742-1141814)
chr3 (242-313)||(39484808-39484880)
chr3 (243-313)||(22424370-22424440)
chr3 (266-312)||(37605421-37605468)
chr3 (242-309)||(42655772-42655839)
chr3 (282-358)||(48909790-48909865)
chr3 (242-314)||(15996379-15996450)
chr3 (243-358)||(49235433-49235547)
[»] chr5 (6 HSPs)
chr5 (461-664)||(33619422-33619630)
chr5 (244-358)||(22780015-22780128)
chr5 (243-312)||(37337323-37337393)
chr5 (242-312)||(26110687-26110758)
chr5 (242-312)||(11300764-11300835)
chr5 (243-309)||(31981793-31981859)
[»] chr8 (6 HSPs)
chr8 (242-312)||(42315341-42315412)
chr8 (242-312)||(45244285-45244356)
chr8 (243-312)||(23828343-23828413)
chr8 (243-314)||(3193173-3193244)
chr8 (240-313)||(26981032-26981105)
chr8 (242-276)||(7496757-7496791)
[»] chr6 (10 HSPs)
chr6 (242-312)||(31665629-31665700)
chr6 (245-312)||(15296147-15296215)
chr6 (243-358)||(26840415-26840529)
chr6 (242-313)||(31442516-31442587)
chr6 (243-313)||(826732-826802)
chr6 (241-358)||(26839987-26840103)
chr6 (243-313)||(21762022-21762092)
chr6 (246-313)||(30836481-30836548)
chr6 (243-317)||(7867944-7868018)
chr6 (243-313)||(20915997-20916067)
[»] scaffold0019 (1 HSPs)
scaffold0019 (154-244)||(108515-108605)
[»] chr2 (11 HSPs)
chr2 (242-358)||(6667462-6667577)
chr2 (242-313)||(32281485-32281556)
chr2 (242-312)||(28926074-28926144)
chr2 (242-358)||(28922372-28922486)
chr2 (243-313)||(38996520-38996590)
chr2 (246-329)||(21922337-21922420)
chr2 (242-313)||(22625387-22625458)
chr2 (243-317)||(28125536-28125610)
chr2 (242-310)||(29280084-29280152)
chr2 (243-313)||(38955840-38955910)
chr2 (259-358)||(14456264-14456362)
[»] chr1 (6 HSPs)
chr1 (243-313)||(15700721-15700791)
chr1 (239-312)||(46555498-46555572)
chr1 (243-313)||(22964007-22964077)
chr1 (254-309)||(3908833-3908888)
chr1 (243-289)||(24819183-24819229)
chr1 (242-289)||(44508600-44508647)
[»] scaffold0014 (1 HSPs)
scaffold0014 (180-239)||(141699-141758)
[»] scaffold0177 (1 HSPs)
scaffold0177 (124-244)||(29835-29957)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 243 - 648
Target Start/End: Complemental strand, 39742364 - 39741956
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtgtt 342  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||| | |||||||||||||||| |||  ||     
T  39742364 atctttcttactaaagcttgtttgatcaagctattgataaccctaatcttaacctaatattttccctcgattatgttagcattaactccttctaatcgt- 39742266  T
Q  343 aattctaatcaacattggaaacaaaaatgtatatacataggagaacaaaaattgctagataccaatgttatttatgacttttgtctgccagcttaatttt 442  Q
          ||| | |||||||||||||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  39742265 ------aataagcattggaaacaaaaatgtata--cataggagaacaaaaattgctggataccaacgttatttatgacttttgtctgccaacttaatttt 39742174  T
Q  443 accaattttcaatgttcc------------taccgacgcctcaagtttcttcagagttaagattaagctttctctttctctcatttcccctcccatcacc 530  Q
    ||||||||||||||||||            ||||| || ||||||||||||||||||| || |||| ||| |||||||||||||||||||| ||||||||    
T  39742173 accaattttcaatgttccccttgatggttgtaccgccggctcaagtttcttcagagttcagcttaaacttcctctttctctcatttccccttccatcacc 39742074  T
Q  531 tcctttcaatatcatatctcattggaaacctaatctcttttgcacatcaatttcattcacccaagttgttaaaaccgtcatcggctcctcttccggcatc 630  Q
    || |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| |||| |||||||||||    
T  39742073 tcatttcaatatcatatctcattggaaacctaatctcctttgcacaacaatttcattcacccaagttgttaaaaccctcatcgcctccccttccggcatc 39741974  T
Q  631 atcatttgaagaacaccg 648  Q
    ||||| |||||| |||||    
T  39741973 atcatctgaagaccaccg 39741956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 243 - 358
Target Start/End: Original strand, 48850726 - 48850840
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtgtt 342  Q
    ||||||||| ||||||||||| || ||||||||||  | ||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||||| |    
T  48850726 atctttctttctaaagcttgtctgatcaagctattgtttaccctaatcttaacctaat-ttttccctccattatgttagcattaactccttctaagtgct 48850824  T
Q  343 aattctaatcaacatt 358  Q
    ||| ||||||| ||||    
T  48850825 aatcctaatcagcatt 48850840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 20077412 - 20077342
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 313  Q
    ||||||||||||||||||||||||||||||| ||     |||||||| |||||||||||||||||||||||    
T  20077412 atctttcttactaaagcttgtttggtcaagcaatatcataccctaattttaacctaatattttccctccat 20077342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 242 - 648
Target Start/End: Complemental strand, 6898823 - 6898414
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtgt 341  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    |||     
T  6898823 tatctttcttactaaagcttgtttgatcaagctattggtaaccctaatcttaacctaatattttccgtccattgtgttagcattaactcctt----gtg- 6898729  T
Q  342 taattctaatcaacattggaaacaaaaatgtatatacataggagaacaaaaattgctagataccaatgttatttatgacttttgtctgccagcttaattt 441  Q
      ||  |||| | |||||||||||||||||||||  ||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| | ||||||    
T  6898728 --atcgtaataagcattggaaacaaaaatgtata--catgggagaacaaaaattgctggataccaacgttatttatgacttttgtctgccaacctaattt 6898633  T
Q  442 taccaattttcaatgttcc------------taccgacgcctcaagtttcttcagagttaagattaagctttctctttctctcatttcccctcccatcac 529  Q
    |||||||||||||||||||            ||||| || ||||||||||||||||||| || |||| ||| |||||||||||||||||||| |||||||    
T  6898632 taccaattttcaatgttccccttgatggttgtaccgccggctcaagtttcttcagagttcagcttaaacttcctctttctctcatttccccttccatcac 6898533  T
Q  530 ctcctttcaatatcatatctcattggaaacctaatctcttttgcacatcaatttcattcacccaagttgttaaaaccgtcatcggctcctcttccggcat 629  Q
    ||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| ||||||||||    
T  6898532 ctcatttcaatatcatatctcattgaaaacctaatctcttttgcacaacaatttcattcacccaagttgttaaaaccctcatcgcctccccttccggcat 6898433  T
Q  630 catcatttgaagaacaccg 648  Q
    |||||| |||||| |||||    
T  6898432 catcatctgaagaccaccg 6898414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 12094925 - 12094856
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctcca 312  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  12094925 atctttcttactaaagcttgtttggtcaagctattagaaaccctaattttaacctaatattttccctcca 12094856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 9451245 - 9451312
Alignment:
Q  246 tttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 313  Q
    |||||||||||||||||| |||||||||||||  | |||||||| |||||||||||||||||||||||    
T  9451245 tttcttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccctccat 9451312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 24257703 - 24257773
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 313  Q
    ||||||||||||||||||||||||||||||| |||  | |||||||| ||||||||||||||| |||||||    
T  24257703 atctttcttactaaagcttgtttggtcaagcaattgttcaccctaattttaacctaatatttttcctccat 24257773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 260 - 358
Target Start/End: Original strand, 7810064 - 7810162
Alignment:
Q  260 ttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactcct--tttaagtgttaattctaatcaacat 357  Q
    ||||||||||||||||||  | ||||||||||||||||||| ||||||||||||||| || | ||||||||||  | |||||| |||| |||||||||||    
T  7810064 ttgtttggtcaagctattgtttaccctaatcttaacctaat-ttttccctccattgt-ttcggattaactccttctataagtgctaatcctaatcaacat 7810161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 4883655 - 4883589
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccc 308  Q
    |||||| |||||||||||||||| ||||||||||||  |||||||||   |||||||| ||||||||    
T  4883655 tatcttacttactaaagcttgttaggtcaagctattcctaaccctaaaactaacctaacattttccc 4883589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 243 - 309
Target Start/End: Original strand, 27067874 - 27067940
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccct 309  Q
    ||||||||||||||||||||||||||||| ||||     |||||||| |||| ||||||||||||||    
T  27067874 atctttcttactaaagcttgtttggtcaaactatcctataccctaattttaatctaatattttccct 27067940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 4e-40; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 242 - 358
Target Start/End: Original strand, 15291460 - 15291575
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtgt 341  Q
    ||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||     
T  15291460 tatctttcttactaaagcttgtttggtcaagctattgtttaccctaatcttaacctaat-ttttccctccattgtattagcattaactccttctaagtgc 15291558  T
Q  342 taattctaatcaacatt 358  Q
    |||| ||||||||||||    
T  15291559 taatcctaatcaacatt 15291575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 1529165 - 1529236
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctccat 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  1529165 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaattttttccctccat 1529236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 11994628 - 11994711
Alignment:
Q  142 taaagcggtgttttgttttttacgagccgtgttactgctattggtttgatggaaggatgttgttttctattctccagtgctact 225  Q
    ||||||||||| |||||||| | ||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11994628 taaagcggtgtcttgtttttgatgaggcgtgttgctgctattggtttgatggaaggatgttgtttgctattctccagtgctact 11994711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 52041455 - 52041384
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 313  Q
    |||||||||||||||||||||| |||||||||||||  | |||||||| ||||||||||||||||| |||||    
T  52041455 tatctttcttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccttccat 52041384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 241 - 313
Target Start/End: Original strand, 1141742 - 1141814
Alignment:
Q  241 gtatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 313  Q
    ||||||||||||||||||||||||||||||||| |||  | || ||||| |||| ||||||||||||||||||    
T  1141742 gtatctttcttactaaagcttgtttggtcaagcaattgttcactctaattttaatctaatattttccctccat 1141814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 39484880 - 39484808
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctat-tagtaaccctaatcttaacctaatattttccctccat 313  Q
    ||||||||||||||||||||||||||||||||||| |  | |||||| | |||||||||||||||||||||||    
T  39484880 tatctttcttactaaagcttgtttggtcaagctatatgttcaccctagttttaacctaatattttccctccat 39484808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 22424440 - 22424370
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 313  Q
    |||||||||||||||| || | |||||||||||||  | |||||||| |||||||||||||||||||||||    
T  22424440 atctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccat 22424370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 37605468 - 37605421
Alignment:
Q  266 ggtcaagctattagtaaccctaat-cttaacctaatattttccctcca 312  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  37605468 ggtcaagctattagtaaccctaattcttaacctaatattttccctcca 37605421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 42655772 - 42655839
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccct 309  Q
    |||||||||||| ||||||||| |||||||||||||  | |||||||| ||||| |||||||||||||    
T  42655772 tatctttcttaccaaagcttgtctggtcaagctattgttcaccctaattttaacataatattttccct 42655839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 282 - 358
Target Start/End: Complemental strand, 48909865 - 48909790
Alignment:
Q  282 accctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtgttaattctaatcaacatt 358  Q
    ||||||||||||||||||| |||||||| |||||||||||  |||||||||| ||| || |||| ||||||| ||||    
T  48909865 accctaatcttaacctaat-ttttcccttcattgtattagtgttaactccttctaaatgctaatcctaatcagcatt 48909790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 15996450 - 15996379
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccatt 314  Q
    |||||||||||||||||||||| || ||||||||||  | ||||||||  ||||||||| |||||||| ||||    
T  15996450 tatctttcttactaaagcttgtctgatcaagctattgtttaccctaattctaacctaat-ttttccctgcatt 15996379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 358
Target Start/End: Complemental strand, 49235547 - 49235433
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtgtt 342  Q
    |||||||||||||||| ||||||||||||||||| | | |||||||| | ||| | |  |||| ||||||||||  || |||||| || ||||||||| |    
T  49235547 atctttcttactaaagtttgtttggtcaagctatcatttaccctaat-tcaacattaattttttcctccattgtgataacattaaatctttttaagtggt 49235449  T
Q  343 aattctaatcaacatt 358  Q
    | | ||||||| ||||    
T  49235448 attcctaatcagcatt 49235433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 461 - 664
Target Start/End: Complemental strand, 33619630 - 33619422
Alignment:
Q  461 taccgacgcctcaagtttcttcagagttaagattaagctttctctttctctcatttcccctcccatcacctcctttcaatatcatatctcattggaaacc 560  Q
    |||||| | |||| ||||||||||| ||||| ||   ||||||| |||||||||||||||||  ||||||||||||||||||||| ||||| | ||||||    
T  33619630 taccgatggctcatgtttcttcaga-ttaagctttctctttctccttctctcatttcccctc--atcacctcctttcaatatcatttctcaatagaaacc 33619534  T
Q  561 taatctctttt--------gcacatcaatttcattcacccaagttgttaaaaccgtcatcggctcctcttccggcatcatcatttgaagaacaccgtcga 652  Q
    |||||||| |         ||||| ||||||||||||||||||||||||||||| |||||| |||| | |||||||||||||| | |||| |||| ||||    
T  33619533 taatctctataacgagtaagcacaacaatttcattcacccaagttgttaaaaccctcatcgcctccccctccggcatcatcatctaaagaccaccttcga 33619434  T
Q  653 aggaggtatgca 664  Q
     |||||||||||    
T  33619433 tggaggtatgca 33619422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 244 - 358
Target Start/End: Complemental strand, 22780128 - 22780015
Alignment:
Q  244 tctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtgtta 343  Q
    |||||||| ||||||||||| || ||||||||||  | ||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||| ||    
T  22780128 tctttctttctaaagcttgtctgatcaagctattgtttaccctaatcttaacctaat-ttttccctccattgtgttagcattaactccttctaagtgcta 22780030  T
Q  344 attctaatcaacatt 358  Q
    ||  |||||| ||||    
T  22780029 atcataatcagcatt 22780015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 37337323 - 37337393
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctcca 312  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||    
T  37337323 atctttcttactaaagcttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcca 37337393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 26110687 - 26110758
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctcca 312  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||| | ||||||||||||||||||||||    
T  26110687 tatctttcttactaaaacttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcca 26110758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 242 - 312
Target Start/End: Complemental strand, 11300835 - 11300764
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctcca 312  Q
    |||||||||||||||| ||||| |||| ||||||| ||||||||||| | ||||||||||||||||||||||    
T  11300835 tatctttcttactaaaacttgtctggtgaagctataagtaaccctaatttttaacctaatattttccctcca 11300764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 243 - 309
Target Start/End: Original strand, 31981793 - 31981859
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccct 309  Q
    |||||| ||||||||||||||||| |||||| |||  | | |||||| |||||||||||||||||||    
T  31981793 atcttttttactaaagcttgtttgatcaagcaattgttcaacctaattttaacctaatattttccct 31981859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 42315341 - 42315412
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctcca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42315341 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcca 42315412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 242 - 312
Target Start/End: Complemental strand, 45244356 - 45244285
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctcca 312  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45244356 tatctttcttactaaagtttgtctggtcaagctattagtaaccctaattcttaacctaatattttccctcca 45244285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 23828343 - 23828413
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctcca 312  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  23828343 atctttcttactagagcttgtttggtcaagctattagtaaccctaatttttaacctaatattttccctcca 23828413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 3193244 - 3193173
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccatt 314  Q
    ||||||||||||||||||||| ||||||||  |||| | | | |||| ||||||||||||||||||||||||    
T  3193244 atctttcttactaaagcttgtctggtcaagtaattattcatcttaattttaacctaatattttccctccatt 3193173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 26981032 - 26981105
Alignment:
Q  240 agtatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 313  Q
    ||||||||||||||||||||||||||| |||||| ||     |||||||| ||||||||||||||| |||||||    
T  26981032 agtatctttcttactaaagcttgtttgatcaagcaatatcataccctaattttaacctaatatttttcctccat 26981105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 242 - 276
Target Start/End: Original strand, 7496757 - 7496791
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctat 276  Q
    ||||||||||||||||||||||||| |||||||||    
T  7496757 tatctttcttactaaagcttgtttgatcaagctat 7496791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 242 - 312
Target Start/End: Complemental strand, 31665700 - 31665629
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctcca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31665700 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcca 31665629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 15296147 - 15296215
Alignment:
Q  245 ctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctcca 312  Q
    ||||||||||||||||||||| |||||||||| ||||||||||| | ||||||||||||||||||||||    
T  15296147 ctttcttactaaagcttgttttgtcaagctataagtaaccctaatttttaacctaatattttccctcca 15296215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 243 - 358
Target Start/End: Original strand, 26840415 - 26840529
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtgtt 342  Q
    ||||||||| ||||||||||||||||||||| || | ||||||||||||||||||| | ||||||||||    | ||| |||||||||||| |||||||     
T  26840415 atctttctttctaaagcttgtttggtcaagccatcattaaccctaatcttaacctact-ttttccctcccaaatcttaacattaactccttctaagtgta 26840513  T
Q  343 aattctaatcaacatt 358  Q
    | | ||||||||||||    
T  26840514 attcctaatcaacatt 26840529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 31442516 - 31442587
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 313  Q
    |||||||||||||||||||||||||||||||| || |   |||||||| |||||||||||||||||||||||    
T  31442516 tatctttcttactaaagcttgtttggtcaagcaatcacataccctaattttaacctaatattttccctccat 31442587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 826802 - 826732
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 313  Q
    ||||||||||||||| ||||| |||||||||||||  | ||| |||| |||||||||||||||||||||||    
T  826802 atctttcttactaaaacttgtctggtcaagctattgttcaccttaattttaacctaatattttccctccat 826732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 241 - 358
Target Start/End: Original strand, 26839987 - 26840103
Alignment:
Q  241 gtatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtg 340  Q
    ||||||||||| |||||| ||||||| |||||| || | ||||||||||||||||||| | ||||||||||    | ||| |||||||||||| ||||||    
T  26839987 gtatctttctttctaaagtttgtttgatcaagccatcattaaccctaatcttaacctact-ttttccctcccaaatcttaacattaactccttctaagtg 26840085  T
Q  341 ttaattctaatcaacatt 358  Q
    | | | ||||||||||||    
T  26840086 taattcctaatcaacatt 26840103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 21762022 - 21762092
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 313  Q
    ||||||||||||||| ||||| || ||||||||||  | |||||||| |||||||| ||||||||||||||    
T  21762022 atctttcttactaaaacttgtctgatcaagctattgctcaccctaattttaacctactattttccctccat 21762092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 246 - 313
Target Start/End: Complemental strand, 30836548 - 30836481
Alignment:
Q  246 tttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 313  Q
    |||||||||||||||||| || |||||| |||  | |||||||| |||| ||||||||||||||||||    
T  30836548 tttcttactaaagcttgtctgatcaagcaattgttcaccctaattttaatctaatattttccctccat 30836481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 7868018 - 7867944
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgta 317  Q
    ||||||||||||||||||| | ||||||||||||     |||||||| | | |||||||||||||||||||||||    
T  7868018 atctttcttactaaagcttatctggtcaagctatctcataccctaatttaaccctaatattttccctccattgta 7867944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 20916067 - 20915997
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 313  Q
    ||||||||||||||||||||| || |||||| ||  |  ||| |||| |||||||||||||||||||||||    
T  20916067 atctttcttactaaagcttgtctgatcaagcaatatgataccttaattttaacctaatattttccctccat 20915997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 108605 - 108515
Alignment:
Q  154 ttgttttttacgagccgtgttactgctattggtttgatggaaggatgttgttttctattctccagtgctactctcggtgttgatagagtat 244  Q
    |||||||| | ||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  108605 ttgtttttgatgaggcgtgttgctgctattggtttgatggaaggatgttgttttctattctccggtgctactcttggtgttgatagtgtat 108515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 8e-26; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 242 - 358
Target Start/End: Original strand, 6667462 - 6667577
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtgt 341  Q
    |||||||||| |||||||||||||||||||||||||  | ||||||||| ||||||||| |||||||||||||| |||||||||||||| || ||| ||     
T  6667462 tatctttctttctaaagcttgtttggtcaagctattgtttaccctaatcctaacctaat-ttttccctccattgcattagcattaactctttctaaatgc 6667560  T
Q  342 taattctaatcaacatt 358  Q
    |||| ||||||| ||||    
T  6667561 taatcctaatcagcatt 6667577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 32281485 - 32281556
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 313  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  32281485 tatctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaacctagtattttccctccat 32281556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 28926074 - 28926144
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctcca 312  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||    
T  28926074 tatctttcttactaaagcttgtctggtcaagctattagtaaccctaattcttaacctaat-ttttccctcca 28926144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 242 - 358
Target Start/End: Complemental strand, 28922486 - 28922372
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtgt 341  Q
    |||||| ||||||||||| ||| |||||||||||||  | ||||||||||||||||||| |||||| |||||||| |||||||||| || || ||||||     
T  28922486 tatcttacttactaaagcatgtctggtcaagctattgtttaccctaatcttaacctaat-ttttccatccattgtgttagcattaa-tcattctaagtgg 28922389  T
Q  342 taattctaatcaacatt 358  Q
    |||| ||||||| ||||    
T  28922388 taatcctaatcagcatt 28922372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 38996590 - 38996520
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 313  Q
    ||||||||||||||||||||| || |||||||||  || |||||||| |||||||||||||||||||||||    
T  38996590 atctttcttactaaagcttgtctgatcaagctatatgttaccctaattttaacctaatattttccctccat 38996520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 246 - 329
Target Start/End: Original strand, 21922337 - 21922420
Alignment:
Q  246 tttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaact 329  Q
    |||||| ||||||||||| || ||||||||| | | |||||||||||||||||||||||||||||| |  | ||||||||||||    
T  21922337 tttctttctaaagcttgtctgatcaagctataacttaccctaatcttaacctaatattttccctccttaatcttagcattaact 21922420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 22625458 - 22625387
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 313  Q
    |||||||||||||||| ||||| ||||||||| ||| |  |||||||| |||||||||||||||||||||||    
T  22625458 tatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccat 22625387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 28125536 - 28125610
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgta 317  Q
    ||||||||||||||||||||| ||||||||||||     |||||||| | | |||||||||||||||||||||||    
T  28125536 atctttcttactaaagcttgtctggtcaagctatctcataccctaatttaaccctaatattttccctccattgta 28125610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 29280084 - 29280152
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctc 310  Q
    |||||||||||||||| ||||| || | ||||||||  | |||||||| ||||||||||||||||||||    
T  29280084 tatctttcttactaaaacttgtctgatgaagctattgttcaccctaattttaacctaatattttccctc 29280152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 38955910 - 38955840
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 313  Q
    ||||| ||||||||||||| | || |||| |||||  ||||||||||  ||||||||||||||||||||||    
T  38955910 atcttacttactaaagcttatctgatcaaactattgataaccctaattctaacctaatattttccctccat 38955840  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 259 - 358
Target Start/End: Complemental strand, 14456362 - 14456264
Alignment:
Q  259 cttgtttggtcaagctattagtaaccctaatcttaac-ctaatattttccctccattgtattagcattaactccttttaagtgttaattctaatcaacat 357  Q
    |||||||||||||||||| | | |||||||| | ||| ||||| |||||||||||||||  ||||||||| ||||| |||||| || | |||||||||||    
T  14456362 cttgtttggtcaagctatcatttaccctaat-tcaactctaat-ttttccctccattgtgatagcattaaatccttctaagtggtattcctaatcaacat 14456265  T

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Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 15700721 - 15700791
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 313  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  15700721 atctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaacctagtattttccctccat 15700791  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 46555498 - 46555572
Alignment:
Q  239 gagtatctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctcca 312  Q
    |||||||||| ||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46555498 gagtatctttattactaaagcttgtccggtcaagctattagtaaccctaattcttaacctaatattttccctcca 46555572  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 22964007 - 22964077
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 313  Q
    ||||| ||||||||||||||| ||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  22964007 atcttacttactaaagcttgtctggtcaagctattggtaaccctaattctaacctaatattttccctccat 22964077  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 3908888 - 3908833
Alignment:
Q  254 taaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccct 309  Q
    |||||||||| || |||||||||| ||||||||||| |||||||| ||||||||||    
T  3908888 taaagcttgtctgatcaagctattggtaaccctaattttaacctactattttccct 3908833  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 243 - 289
Target Start/End: Original strand, 24819183 - 24819229
Alignment:
Q  243 atctttcttactaaagcttgtttggtcaagctattagtaaccctaat 289  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||||||    
T  24819183 atcttacttaccaaagcttgtttggtcaagctattactaaccctaat 24819229  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 44508600 - 44508647
Alignment:
Q  242 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaat 289  Q
    |||||||||| ||||||||||| || ||||||||||| ||||||||||    
T  44508600 tatctttctttctaaagcttgtctgatcaagctattactaaccctaat 44508647  T

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Target: scaffold0014 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 141699 - 141758
Alignment:
Q  180 tattggtttgatggaaggatgttgttttctattctccagtgctactctcggtgttgatag 239  Q
    ||||||||| ||||||| ||||||||| | |||||||||||||||||| |||||||||||    
T  141699 tattggttttatggaagaatgttgtttgccattctccagtgctactcttggtgttgatag 141758  T

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Target: scaffold0177 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 244
Target Start/End: Original strand, 29835 - 29957
Alignment:
Q  124 agatatttacgcacttcataaagcggtgttttgttttttacgagccgtgttactgctattggttt--gatggaaggatgttgttttctattctccagtgc 221  Q
    ||||||| ||||||||||||||| |||    ||||||||| ||   ||||| ||||||||||| |  ||||||||||||  |||| || ||||| |||||    
T  29835 agatattcacgcacttcataaagtggtaacctgttttttatgatgtgtgttgctgctattggtattggatggaaggatgcagtttgctgttctctagtgc 29934  T
Q  222 tactctcggtgttgatagagtat 244  Q
    |||||| ||| ||||||| ||||    
T  29935 tactcttggtattgatagtgtat 29957  T

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