View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1156_low_10 (Length: 335)
Name: NF1156_low_10
Description: NF1156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1156_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 111 - 322
Target Start/End: Original strand, 26909380 - 26909591
Alignment:
| Q |
111 |
agccactgtagccaatcaccgccgcataaaccgccagtgcatgctagcccgccaccgagagccacaacagggaatactgtataaatcgtgggtgattaaa |
210 |
Q |
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| T |
26909380 |
agccgctgtagccaatcaccgccacataaaccgccagtgcatgctagaccgccaccgagagccacaacagggaatactgtataaatcgtgggtgattaaa |
26909479 |
T |
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| Q |
211 |
ttaaactaaatagaatatgtcattcgaaaacaaaatggcacaatggttgaagaagtggactgaccagtacaataaaccaaggcatcagaacataatacta |
310 |
Q |
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| T |
26909480 |
ttaaactaaatagaatatgtcatttgaaaacaaaatggcacaatggttgaaaaagtggactgaccaatacactaaaccaaggcatcagaacataatacta |
26909579 |
T |
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| Q |
311 |
ctgactcggttc |
322 |
Q |
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| T |
26909580 |
ctatctcggttc |
26909591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 26909189 - 26909266
Alignment:
| Q |
32 |
agtatatttatggagattgatttatattaaataatgttgtataactatcacctgatacacataacacttctcatgctc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26909189 |
agtatatttatggagattgatttatattaaataatgttgtataactatcacctgatacacataacacttctcatgctc |
26909266 |
T |
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