View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1156_low_2 (Length: 623)
Name: NF1156_low_2
Description: NF1156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1156_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 97 - 611
Target Start/End: Original strand, 35552442 - 35552952
Alignment:
| Q |
97 |
tatgtactgacaaaatatactgaacattagatactagtaataacttgagaaaatttaattaattgaacctaaccacgtgtattggtgttcgtaaaccagg |
196 |
Q |
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| T |
35552442 |
tatgtactgacaaaatatactgaacattagatactagtaataacttgagaaaatttaattaattgaacctaaccacgtgtattggtgttcgtaaaccagg |
35552541 |
T |
|
| Q |
197 |
ccgccttcgatataaagtattgttgctatataagaatggtcaacatttgacatataccaatgcaatagttgaaatatgagtcagtcctttttgagcaaga |
296 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35552542 |
ccgccttcgatataaagtattgttgctacataagaatggtcaacatttgacatatgccaatgcaatagttgaaatatgagtcagtcctttttgagcaaga |
35552641 |
T |
|
| Q |
297 |
tttataatttattgaatatcttagtttgtgtgtactgtttgttgtctgcatctttcacacaagttaggctgtgagattgaattcacacttcttttagtta |
396 |
Q |
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| T |
35552642 |
tttataatttattgaatatcttagtttgtgtgtactatt----gtctgcgtctttcacacaagttaggatgtgagattgaattcacacttcttttagtta |
35552737 |
T |
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| Q |
397 |
tattagagatttctatcacacgcatctaatatcataaaatatattgttgattatgatattgtttgatctaaatttgttttcattgtgattgtttccttgg |
496 |
Q |
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| T |
35552738 |
tattagaggtttctatcacacgcatctaatatcacaaaatatattgttgattatgatattgtttgatctaagtttgttttcattgtgattgtttccttgg |
35552837 |
T |
|
| Q |
497 |
tagggatatgggagatcactttggttgatgcatggaatgtttaaagccaatggagggtgtggttatgttaaaaaaccagattttctcttaacgactggtc |
596 |
Q |
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| T |
35552838 |
tagggatatgggagatcactttggttgatgcatggaatgtttagagccaatggagggtgtggttatgttaaaaaaccagattttctcttaacaactggtc |
35552937 |
T |
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| Q |
597 |
cggataacgaggtct |
611 |
Q |
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| T |
35552938 |
cggataacgaggtct |
35552952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 515 - 582
Target Start/End: Original strand, 30082909 - 30082976
Alignment:
| Q |
515 |
ctttggttgatgcatggaatgtttaaagccaatggagggtgtggttatgttaaaaaaccagattttct |
582 |
Q |
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||||||||||||||||||||||||| | ||||||| | ||||||||||| ||||||||||| ||||| |
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| T |
30082909 |
ctttggttgatgcatggaatgtttagatccaatggggaatgtggttatgtgaaaaaaccagactttct |
30082976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 511 - 570
Target Start/End: Original strand, 35522891 - 35522950
Alignment:
| Q |
511 |
atcactttggttgatgcatggaatgtttaaagccaatggagggtgtggttatgttaaaaa |
570 |
Q |
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| T |
35522891 |
atcactttggtatatgcaaggaatgtttagagcaaatggagggtgtggttatgtgaaaaa |
35522950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 570
Target Start/End: Original strand, 35509556 - 35509615
Alignment:
| Q |
511 |
atcactttggttgatgcatggaatgtttaaagccaatggagggtgtggttatgttaaaaa |
570 |
Q |
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| T |
35509556 |
atcactctggttgatgcaaggaatgttcagagcaaatggaggatgtggttatgtaaaaaa |
35509615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 493 - 597
Target Start/End: Original strand, 31710404 - 31710508
Alignment:
| Q |
493 |
ttggtagggatatgggagatcactttggttgatgcatggaatgtttaaagccaatggagggtgtggttatgttaaaaaaccagattttctcttaacgact |
592 |
Q |
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|||| |||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||| |||| ||| |
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| T |
31710404 |
ttggcagggttatgggagatctctttggttgatgcaaggaatgtttaaagccaatggaggatgcggttttgttaaaaaaccagattttctattaaaaact |
31710503 |
T |
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| Q |
593 |
ggtcc |
597 |
Q |
| |
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||||| |
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| T |
31710504 |
ggtcc |
31710508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 493 - 582
Target Start/End: Complemental strand, 31010954 - 31010865
Alignment:
| Q |
493 |
ttggtagggatatgggagatcactttggttgatgcatggaatgtttaaagccaatggagggtgtggttatgttaaaaaaccagattttct |
582 |
Q |
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|||| |||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||| |||||||||||| |||||||| |
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| T |
31010954 |
ttggcagggttatgggagatctctttggttgatgcaaggaatgtttaaagccaatggaggatgcggttttgttaaaaaacctgattttct |
31010865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 519 - 582
Target Start/End: Original strand, 31653797 - 31653860
Alignment:
| Q |
519 |
ggttgatgcatggaatgtttaaagccaatggagggtgtggttatgttaaaaaaccagattttct |
582 |
Q |
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|||||||||| || ||||| ||||| |||||||||||||||||||| |||||||| || ||||| |
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| T |
31653797 |
ggttgatgcaagggatgttcaaagcgaatggagggtgtggttatgtgaaaaaacctgaatttct |
31653860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 519 - 582
Target Start/End: Original strand, 31703983 - 31704046
Alignment:
| Q |
519 |
ggttgatgcatggaatgtttaaagccaatggagggtgtggttatgttaaaaaaccagattttct |
582 |
Q |
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|||||||||| || ||||| ||||| |||||||||||||||||||| |||||||| || ||||| |
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| T |
31703983 |
ggttgatgcaagggatgttcaaagcgaatggagggtgtggttatgtgaaaaaacctgaatttct |
31704046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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