View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1156_low_21 (Length: 218)
Name: NF1156_low_21
Description: NF1156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1156_low_21 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 48482787 - 48482594
Alignment:
| Q |
25 |
actttttcttctgaatttgctcnnnnnnnggagggcagcaaagtcatttatgtccataatcaatatatagatttttatggaagtaagcatttagttacat |
124 |
Q |
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| T |
48482787 |
actttttcttctgaatttgctctttttttggagggcagcaaagtcatttatgtccataatcaatatatagatttttatggaagtaagcatttagttacat |
48482688 |
T |
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| Q |
125 |
ggctattacttccgctgctgggaaaatatgttgatattgtttaaatgtacagttgcgttctacagtgaagaaggggactcaaataacacagacg |
218 |
Q |
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| T |
48482687 |
ggctattacttccgctgctgggaaaatatgttgatattgtttaaatgtacagttgcgttctacagtgaagaaggggactcaaataacacagacg |
48482594 |
T |
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