View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1156_low_3 (Length: 536)
Name: NF1156_low_3
Description: NF1156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1156_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 84 - 343
Target Start/End: Complemental strand, 47518332 - 47518072
Alignment:
| Q |
84 |
attgagttaggcttaagcttaaata-taagaaatacatttgtacttgattccctctatgtatattgttttgtaaaacattatgcgtaaaggttgtataat |
182 |
Q |
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| T |
47518332 |
attgagttaggcttaagcttaaatactaagaaatacatttgtacttgattctctctatgtatattgttttgtaaaacattatgcggaaaggttgtataat |
47518233 |
T |
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| Q |
183 |
gtttctgcattatgtgaaactctcaagtccaggttcacccgcatgatgtgcttgtcaaagtcttatgttaacatacccaaataatggtctgtgtccaggt |
282 |
Q |
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| T |
47518232 |
gtttctgcattatgtgaaactctcaagtccaggttcacccgcatgatgtgcttgtcaaagtcttatgttaacatacccaaataatggtctgtgtccaggt |
47518133 |
T |
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| Q |
283 |
tcctcacacataacaaatgtaataaaaagcattatgtgaaaaagaaggttgacgcaaaagt |
343 |
Q |
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| T |
47518132 |
tcctcacacataacaaatgtaataaaaagcattatgtgaaaaagaaggttgacgcaaaagt |
47518072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 348 - 508
Target Start/End: Complemental strand, 47517976 - 47517814
Alignment:
| Q |
348 |
tgggatttctatttttcacttgcaatattggcttcgatttaatatggtctgagagaaaaatatattgattctgtgtaatgtgaatatttcattagattat |
447 |
Q |
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| T |
47517976 |
tgggatttctatttttcacttgcaatattggcttcgatttaatatggtctgagagaaaaatatattgattctgtgtaatgtgaatatttcattagattat |
47517877 |
T |
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| Q |
448 |
ttttggtgtcctctct--ctctataattgtttctgcacatatcaatttttaatattgttggag |
508 |
Q |
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| T |
47517876 |
ttttggtgtcctctctctctctataattgtttctgcacatatcaatttttaattttgatggag |
47517814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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